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removeElem error

Open jsoghigian opened this issue 11 months ago • 1 comments

Hi,

Trying to use this tool on a sorted BAM file to subsample to a much lower coverage for testing. I'm getting the following error from the below command: variant H10.sorted.bam -m 2 -v -b > H10.subset.bam removeElem: elem of value 327553260 is above max bin 2001,250000000,0

Not sure what that number is, or how to address it - any idea?

jsoghigian avatar Feb 19 '25 23:02 jsoghigian

This error appears to occur regardless of what filter I set or if I attempt to subset (e.g. t o a specific chromosome), and whether I use -o or not.

jsoghigian avatar Feb 21 '25 17:02 jsoghigian