hover_net

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using Consep dataset but generated error when run“python run_train.py --view=train ”

1

@vqdang @simongraham Hi！I generated this error as below，I don't know how to fix it.Hope you could help! PS D:\hovernet\hover_net-master\hover_net-master> python run_train.py --view=train Using manual seed: 10 Traceback (most recent call...

Junjunsss

lack of nuclei number after inference

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Hi, I'm using run_infer.py to make inference on tiles. After run script run_infer.py, I got output json and mat file. But I found that the number of nuclei is not...

akidway

CoNSeP dataset

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How do you all get the CoNSeP dataset? It seems like I can't log in https://warwick.ac.uk/fac/cross_fac/tia/data/hovernet/

jinaozhang

CoNSep Dataset - compressed or not?

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Hello, I would like to ask if the dataset presented in the article is compressed with the JPEG algorithm or it is uncompressed like the BreCaHAD dataset?

julimer228

centroid/contour and bounding box coordinates don't match

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Hi, I run the WSI version of hovernet, and found that the bounding box coordinates are shifted relative to the centroid/contour coordinates. Example of first nucleus nucleus ID= 4 type=...

xingyi19

pannuke

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怎么使用利用pannuke预训练的hovernet模型对病理图片进行肿瘤细胞分割

shy-kie

PanNuke trained weights

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Could you please tell on which fold pannuke model (that is provided with the repo) was trained?

adnan1306

Where do the other four colors of images in the tnbc data set come from?

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https://drive.google.com/drive/folders/1taB8boGyycjV4X1a2vCIAV9fwMxFSS41 May I ask why there are folders 5784, A1AS, A2I6 and A13E in the tnbc dataset in this link? How were the images in these folders generated? What is...

KB-co

Hi, I am getting list index out of range error during training

2

Hi, I am getting list index out of range error during training 

Noirombre

SyntaxError: EOL while scanning string literal during run_train.py

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I was able to successfully extract both my 'train' and 'valid' patches for the CoNSeP data, but get this error when using the `run_train.py --view=` execution. The `.npy` files are...

jpw011