vitessce-python
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vitessce
Python API and Jupyter widget for Vitessce
I made a few small fixes and also updated examples where possible to be a bit more efficient with the dynamic gene loading. - Add intermediate path creation because `pandas`...
I'm hoping that the pinned version of the core vitessce.js dependency can be updated sometime soon? In particular, this is because of the newer Anndata support (https://github.com/vitessce/vitessce/pull/1319), but in general...
This PR adds the `demos/` directory, which is the next iteration of the `vitessce-data` repository. Each subdirectory of `demos` contains a snakemake workflow to produce the vitessce-compatible files (e.g., AnnData-Zarr...
**Describe the bug** This was noticed on [RStudioConnect ](https://ccb-rstudio-connect.hms.harvard.edu/Vitessce_hypothalamus_python/) which converts all juypter content into html via Nbconvert. The resulting html page does not load vitessce widgets. More details from...
It seems that OmeTiffWrapper fails to load a tiff file if the file path contains a space character. For example, it works fine if the filename is "DATA.tiff", but fails...
**Describe the bug** So this was noticed on [RStudioConnect ](https://ccb-rstudio-connect.hms.harvard.edu/Vitessce_hypothalamus_python/) on O2. For some reason only vitessce seems affected but html widgets do not render after conversion with nbconvert (which...
**Describe the bug** In a notebook environment, Vitessce fails to render, and `Exception opening new comm` is printed to the log. I first noticed this in the workspace environment PSC...
Maybe by `y` and then `x`? Refactoring the code right now causes the the order of the elements to change, changing the resulting JSON, but there hasn't been any change...
See discussion at #188 - we could make it much easier to use single-channel TIFFs and OME-NGFF zarr stores in `vitessce`-python by adding wrapper classes for them, rather than forcing...