vcell
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virtualcell
Virtual Cell Framework
Vcell appears to have an issue where (on Release) VCell loses responsiveness, requiring the JVM itself to be killed.
BMDB and Pathway Commons imports are broken on Rel and Alpha due to MalformedURLException BMDB error (when retrieving a model) MalformedURLException-no protocol: nullBIOMD0000000355 Pathway Commons error (when trying to search):...
The new authentication method has been implemented within the Java client application, but it's rough around the edges. - [x] Remove legacy login GUI and place it within the Web...
Help originally create by Li Ye, can find by checking repository for Li Ye
### Motivation - user interface bugs place VCell in a bad light - leading the user to judge the quality of the underlying product with suspicion. ### Completion Criteria -...
In the process of exporting some published projects (ex.: biomodel_49411430 and biomodel_435789302), the resulting sedml file contains no tasks. A cursory look confirms that there are simulations in the VCell...
The annotations branch has search for annotations in multiple databases and automatic retrieval and adding of annotations, eliminating the need to go to external databases and search/enter external ids. The...
When creating a new geometry for PDE sims, image fails to load NullPointerException-Cannot invoke "org.vcell.vcellij.ImageDatasetReader.getImageSizeInfoForceZ(String, java.lang.Integer)" because "imageDatasetReader" is null
## Problem The current method for authentication within VCell is outdated and no longer follows the required standards for the grant provided. Having to update our authorization to a modern...