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Add contig names when possible to ALT alleles in vg deconstruct

Open glennhickey opened this issue 4 years ago • 2 comments

This would be a field like AT but containing the "stable coordinate" version, ie its range in the original input contig sequence.

glennhickey avatar Feb 08 '22 16:02 glennhickey

This is provided by the UT field. There is an open PR.

On Tue, Feb 8, 2022 at 5:35 PM Glenn Hickey @.***> wrote:

This would be a field like AT but containing the "stable coordinate" version, ie its range in the original input contig sequence.

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ekg avatar Feb 08 '22 17:02 ekg

Thanks, that does seem related. But I was thinking of a single value, ex: "JAGYVH010000062.1:50-1000002", rather than something for each step.

glennhickey avatar Feb 08 '22 17:02 glennhickey