Seurat.utils

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downsampling in `scBarplot.CellFractions` works unexpectedly: if the 5% thr is used, it does not "upsample" smaller categories

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- Therefore downsampling is a weird hybrid, atm, and misleading. ```r > scBarplot.CellFractions(fill.by = "Major_Celltypes", obj = combined.obj, group.by = "1", downsample = T) The size of the smallest group...

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**Description** .parseKeyParams should be tolerant to missing p variable and jsut return NULL **Expected Behavior** No error, silent NULL **Buggy Behavior** ```r > clUMAP(ident = "integrated_snn_res.0.5", obj = combined.obj) Error...

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- [ ] qUMAP should have auto-suffixing by splitby - [ ] rename splitby to split.by if does not break

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SEO/standalone/ https://github.com/vertesy/SEO/issues/118

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```r ls.Seurat

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### Now ```r ls.Seurat

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**Describe the bug** ` AutoLabelTop.logFC(res = res) : Not all clusters returned DE-genes!`  **Expected behavior** Make up names for missing **Additional context** ```r > combined.obj combined.obj

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- It seems that quantile cutoff in `DimPlot()` works nicer ` than in plot3D.umap.gene()`. - I assume it's because they cutoff differently: probably only on the non-zero values - Not...

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## ToDo list

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