RTCR

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The TRBV gene is missing

1

There are only 48 trbv genes in RTCR, but it should be 66 at most at present. Could you please provide the way and file to replace the database

pengbo233

TRBD d_call not matched and CDR3AA differents from mixcr

3

Hello, thank you very much for providing the RTCR code. It helps with replacing mixcr for analysis. However, I have noticed two issues: I noticed that the nucleotide sequences for...

pengbo233

Slightly different results when applying rtcr to the same dataset twice?

1

Hi, for some pipeliene tests we run rtcr several times on the same fastq input files. We noted differences in the reconstructed T-cell clones. The differences mainly affect clones with...

MagdalenaFeldhahn

Question about rnaseq data

1

Is it possible to utilize your tool for the detection of TCRb in bulk tumor rnaseq data(ie without enrichment of tcrs)? In case, do you think that it is necessary...

GuidoLeoni

Question about output

1

Hi Bram, I am using RTCR to identify the TCR repertoire from amplicon sequencing. I have some more question abouts the output result. 1) how can get the mapping rate...

wuying1984

Bug Issue: QMerge and IMerge failure

3

Hi, I was using the RTCR pipeline via the DNANexus platform and for fastq.gz processing of paired-end files and came across a "No Such file in Directory" error. As its...

aishwaryachander

RTCR example output for immunarch

3

Hi from ex-tcR developer! Thank you for creating and supporting RTCR! We recently received requests to provide a option to read RTCR files. Would you be so kind to give...

vadimnazarov