ERROR: Could not build wheels for velocyto, which is required to install pyproject.toml-based projects
× python setup.py bdist_wheel did not run successfully. │ exit code: 1 ╰─> [43 lines of output] ['/private/var/folders/fl/b2bz90qj3g5gvl83n8n2vpvr0000gn/T/pip-install-wlbeuffp/velocyto_5ef48d94f2d94a81a2432272c2670d6d/setup.py', 'bdist_wheel', '-d', '/private/var/folders/fl/b2bz90qj3g5gvl83n8n2vpvr0000gn/T/pip-wheel-l3nb9o_l'] running bdist_wheel running build running build_py creating build creating build/lib.macosx-10.9-x86_64-cpython-310 creating build/lib.macosx-10.9-x86_64-cpython-310/velocyto copying velocyto/transcript_model.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto copying velocyto/diffusion.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto copying velocyto/metadata.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto copying velocyto/analysis.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto copying velocyto/molitem.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto copying velocyto/_version.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto copying velocyto/neighbors.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto copying velocyto/constants.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto copying velocyto/estimation.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto copying velocyto/init.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto copying velocyto/feature.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto copying velocyto/logic.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto copying velocyto/indexes.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto copying velocyto/utils.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto copying velocyto/gene_info.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto copying velocyto/r_interface.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto copying velocyto/segment_match.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto copying velocyto/counter.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto copying velocyto/serialization.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto copying velocyto/read.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto creating build/lib.macosx-10.9-x86_64-cpython-310/velocyto/commands copying velocyto/commands/velocyto.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto/commands copying velocyto/commands/run.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto/commands copying velocyto/commands/init.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto/commands copying velocyto/commands/run_smartseq2.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto/commands copying velocyto/commands/dropest_bc_correct.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto/commands copying velocyto/commands/run_dropest.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto/commands copying velocyto/commands/run10x.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto/commands copying velocyto/commands/_run.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto/commands running build_ext building 'velocyto.speedboosted' extension creating build/temp.macosx-10.9-x86_64-cpython-310 creating build/temp.macosx-10.9-x86_64-cpython-310/velocyto clang -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /Users/dairui/anaconda3/include -fPIC -O2 -isystem /Users/dairui/anaconda3/include -I/Users/dairui/anaconda3/lib/python3.10/site-packages/numpy/core/include -I/Users/dairui/anaconda3/include/python3.10 -c velocyto/speedboosted.c -o build/temp.macosx-10.9-x86_64-cpython-310/velocyto/speedboosted.o -fopenmp -ffast-math clang: error: unsupported option '-fopenmp' error: command '/usr/bin/clang' failed with exit code 1 [end of output]
note: This error originates from a subprocess, and is likely not a problem with pip. ERROR: Failed building wheel for velocyto Running setup.py clean for velocyto Failed to build velocyto ERROR: Could not build wheels for velocyto, which is required to install pyproject.toml-based projects
Has anyone found a solution to this? I am still running into this bug trying to install velocyto