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BiocManager missing in fresh install

Open mmoisse opened this issue 6 years ago • 1 comments

I just installed a new version of R without any libraries yet. When installing my first package from Bioconductor, I got the following error, suggesting me to install BiocManager myself. Could pacman take care of this and install BiocManager if deemed needed?

Tx

> pacman::p_load(biomaRt)
Warning messages:
1: package ‘biomaRt’ is not available (for R version 3.6.0) 
2: 'BiocManager' not available.  Could not check Bioconductor.

Please use `install.packages('BiocManager')` and then retry. 
3: In p_install(package, character.only = TRUE, ...) :
4: In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called ‘biomaRt’
5: In pacman::p_load(biomaRt) : Failed to install/load:
biomaRt

mmoisse avatar Aug 08 '19 08:08 mmoisse

This would be really useful

NathanSkene avatar Feb 07 '20 12:02 NathanSkene