transcriptomics topic

List transcriptomics repositories

CyteType

96
Stars
16
Forks
96
Watchers

Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data

CyteTypeR

27
Stars
0
Forks
27
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Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data

STAgent

45
Stars
10
Forks
45
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STAgent is a multimodal LLM-based AI agent that enables deep research about spatial transcriptomics data

PertEval

33
Stars
8
Forks
33
Watchers

Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.

CirComPara

16
Stars
11
Forks
16
Watchers

:microscope: A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data