transcriptomics topic
List
transcriptomics repositories
CyteType
96
Stars
16
Forks
96
Watchers
Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data
CyteTypeR
27
Stars
0
Forks
27
Watchers
Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data
STAgent
45
Stars
10
Forks
45
Watchers
STAgent is a multimodal LLM-based AI agent that enables deep research about spatial transcriptomics data
PertEval
33
Stars
8
Forks
33
Watchers
Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.
CirComPara
16
Stars
11
Forks
16
Watchers
:microscope: A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data