Help with [error] std::exception

[Griffin-Azrak]

Hi all,

I recently ran step 1 of the kmdiff pipeline (kmdiff count) successfully. However, when attempting Step 2 (kmdiff diff), I encountered an error.

Here's the command I used:

kmdiff diff --km-run results --nb-controls 48 --nb-cases 80 --output-dir diff_output --significance 0.05 --correction bonferroni --threads 42

And the error I received:

[2025-04-14 10:52:06.382] [info] Process partitions
[2025-04-14 10:52:09.192] [error] std::exception

I’ve checked for:

-The sample order in kmtricks.fof is correct (48 controls followed by 80 cases). -There are no missing or empty files in the dataset. -matrices/ is currently empty, which I assume is expected after count and before diff.

Does anyone have insight into what might be causing this std::exception error or how to further debug it?

Thanks in advance!