RetroSeq
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$cfh or $currentTypeAnchorsFile?
Hello! I am working on running through RetroSeq, and it seem that the discover stage is working - but the call stage give me this error, which I haven't been able to figure out which file it is missing?
Found sample: CPBWGS_11 Calling sample CPBWGS_11 Beginning paired-end calling... PE Call: >rnd-2_family-5LINE/CR1-Zenon(ReconFamilySize=93,FinalMultipleAlignmentSize=88) No such file or directory at retroseq.pl line 660, <$tfh> line 1.
Thanks! Kristian