theislab
Extend PyDESeq2 class to support arbitrary contrasts and designs
Description of feature
Blocked by https://github.com/owkin/PyDESeq2/issues/213
See also https://github.com/theislab/pertpy/blob/2cc7ff77695cb616bb3ab207b5e506c0880aadb1/pertpy/tools/_differential_gene_expression/_pydeseq2.py#L62-L69
Migrated from https://github.com/scverse/multi-condition-comparisions/issues/13
Description of feature
Blocked by owkin/PyDESeq2#213
See also https://github.com/theislab/pertpy/blob/2cc7ff77695cb616bb3ab207b5e506c0880aadb1/pertpy/tools/_differential_gene_expression/_pydeseq2.py#L62-L69
Migrated from scverse/multi-condition-comparisions#13
Critical feature! Looking forward to it.
Hi, just wanted to let you know that ENH Generic design support using formulaic was merged and published as a pre-release (0.5.0pre1) 😃
Let me know if I can be of any help. In particular, 0.5.0pre1 is a pre-release so there's some flexibility left to accommodate to pertpy's API if needed.