taningh86

ValueError: The sorting object has spikes exceeding the recording duration.

15

Hi, This error below is new and never happened before while trying to extract waveforms from sorted data. Below is the code: ``sorting_KS25 = ss.read_sorter_folder(base_folder/"results_KS25") sorting_KS25 recording_saved = si.load_extractor(base_folder /...

Waveform processing by unit very slow in version 0.101.0

10

Hi, Once the waveform figure is plotted its taking a lot of time (~2 mins) to process from waveform of one unit to another. This also happened with 0.100.0 but...

Requesting - to_neo_spiketrain_list()

2

Hi, It will be great if a function can be incorporated in spikeinterface modules to convert kilosort data into neo_spiketrain list. Currently, I believe in spiketrain only a function that...

Index "xyz" is out of bounds for axis "xyx"

10

Hi, I am getting the index error saying that "index 2054149 is out of bounds for axis 0 with size 2054146" when I try to run `sw.plot_amplitudes(sa,backend='ipywidgets')`. I am aware...

Unit locations discrepancy between SI and PHY

48

Hi, I am seeing some units in Phy that have locations in the shank not where SI is showing when I run `sw.plot_unit_locations(sa,width_cm =2, backend ="ipywidgets")`. I am curious if...

What module in SI is currently used for cross-session comparison?

2

Hi, Since spiketoolkit was deprecated few years ago, what module is used for comparison across different recording sessions? Thanks

sorting_analyzer not incorporated in version 0.100.8

2

Hi, This issue could have been tagged in my last issue post about Numpy error with ver 0.101.0 but it is closed now so making a new issue here. In...

Hi, Wondering if correlograms in Phy are normalized by firing rate. correlograms from Phy and spikeinterface looks different. Thanks J

Multiple template comparison 'm_tcmp'

5

Hi, I have used pairwise 'p_tcmp' comparisons for matching units in two recording sessions and it works with the agreement scores. However, when I am comparing/matching multiple recordings `m_tcmp` I...

Process a recording by channel group

4

Hi, My recordings areas with NPX 2.0 are pretty diffeent - one is from the cortex and the other is from the hypothalamus. The electrophysiological properties of these neurons in...