scripts

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Organization:

• bioinformatics:

Tools of my trade. Currently some utilities to reformat data files. Highlight: biocyc2picrust.sh Convert BioCyc Collection flat-files into format needed by PICRUSt for processing.

• EDA:

Scripts to make it easy to perform Exporatory Data Analysis from the comfort of your command line.

Highlight: samp Efficiently sample lines from a large file or infinite pipe.

• latex:

Scripts to make \LaTeX document creation easier. Currently not working.

• security:

Highlight: firefox_heartbleed_scan.sh Check your history for impacted servers.

Highlight: update-tbb Make updating TOR tarballs easier.

• unix_sets:

Convenience scripts for bringing set-logic like operations to the command line.

• unix_utils:

Highlights:

samp: Efficiently sample lines from a large file or infinite pipe.

shorten-filenames.sh:

Utility to get rid of long file or directory names that cause problems for encfs, rsync, rdiff-backup, and other programs.