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Installation error

Open hannibal-paul opened this issue 6 years ago • 4 comments

I have installed PCL library in my Jetson TX2 running Ubuntu 18.04.

I am getting error when I tried to setup python-pcl.

sudo python3 setup.py install running install running bdist_egg running egg_info writing python_pcl.egg-info/PKG-INFO writing dependency_links to python_pcl.egg-info/dependency_links.txt writing requirements to python_pcl.egg-info/requires.txt writing top-level names to python_pcl.egg-info/top_level.txt reading manifest file 'python_pcl.egg-info/SOURCES.txt' writing manifest file 'python_pcl.egg-info/SOURCES.txt' installing library code to build/bdist.linux-aarch64/egg running install_lib running build_py running build_ext skipping 'pcl/_pcl_180.cpp' Cython extension (up-to-date) building 'pcl._pcl' extension aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DEIGEN_YES_I_KNOW_SPARSE_MODULE_IS_NOT_STABLE_YET=1 -I/usr/local/lib/python3.6/dist-packages/numpy/core/include -I/usr/include/pcl-1.8 -I/usr/include/ni -I/usr/include/openni2 -I/usr/include/eigen3 -I/usr/include/ni -I/usr/include/openni2 -I/usr/include/vtk-7.0 -I/usr/include/python3.6m -c pcl/_pcl_180.cpp -o build/temp.linux-aarch64-3.6/pcl/_pcl_180.o -std=c++11 In file included from /usr/local/lib/python3.6/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822:0, from /usr/local/lib/python3.6/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.6/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from pcl/_pcl_180.cpp:661: /usr/local/lib/python3.6/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ In file included from pcl/_pcl_180.cpp:798:0: /usr/include/pcl-1.8/pcl/keypoints/uniform_sampling.h:44:2: warning: #warning UniformSampling is not a Keypoint anymore, use <pcl/filters/uniform_sampling.h> instead. [-Wcpp] #warning UniformSampling is not a Keypoint anymore, use <pcl/filters/uniform_sampling.h> instead. ^~~~~~~ pcl/_pcl_180.cpp: In function ‘int __pyx_pf_3pcl_4_pcl_18ConditionalRemoval___cinit__(__pyx_obj_3pcl_4_pcl_ConditionalRemoval*, __pyx_obj_3pcl_4_pcl_ConditionAnd*)’: pcl/_pcl_180.cpp:54593:153: warning: ‘pcl::ConditionalRemoval<PointT>::ConditionalRemoval(pcl::ConditionalRemoval<PointT>::ConditionBasePtr, bool) [with PointT = pcl::PointXYZ; pcl::ConditionalRemoval<PointT>::ConditionBasePtr = boost::shared_ptr<pcl::ConditionBase<pcl::PointXYZ> >]’ is deprecated: ConditionalRemoval(ConditionBasePtr condition, bool extract_removed_indices = false) is deprecated, please use the setCondition (ConditionBasePtr condition) function instead. [-Wdeprecated-declarations] t(((__pyx_t_3pcl_15pcl_filters_180_ConditionBasePtr_t)__pyx_v_cond->me), NULL); ^ In file included from pcl/_pcl_180.cpp:703:0: /usr/include/pcl-1.8/pcl/filters/conditional_removal.h:632:7: note: declared here ConditionalRemoval (ConditionBasePtr condition, bool extract_removed_indices = false) : ^~~~~~~~~~~~~~~~~~ pcl/_pcl_180.cpp: In function ‘PyObject* __pyx_pf_3pcl_4_pcl_32GeneralizedIterativeClosestPoint_4gicp(__pyx_obj_3pcl_4_pcl_GeneralizedIterativeClosestPoint*, __pyx_obj_3pcl_4_pcl_PointCloud*, __pyx_obj_3pcl_4_pcl_PointCloud*, PyObject*)’: pcl/_pcl_180.cpp:59000:60: warning: ‘void pcl::GeneralizedIterativeClosestPoint<PointSource, PointTarget>::setInputCloud(const PointCloudSourceConstPtr&) [with PointSource = pcl::PointXYZ; PointTarget = pcl::PointXYZ; pcl::GeneralizedIterativeClosestPoint<PointSource, PointTarget>::PointCloudSourceConstPtr = boost::shared_ptr<const pcl::PointCloud<pcl::PointXYZ> >]’ is deprecated: [pcl::registration::GeneralizedIterativeClosestPoint::setInputCloud] setInputCloud is deprecated. Please use setInputSource instead. [-Wdeprecated-declarations] __pyx_v_gicp.setInputCloud(__pyx_v_source->thisptr_shared); ^ In file included from /usr/include/pcl-1.8/pcl/registration/gicp.h:373:0, from pcl/_pcl_180.cpp:754: /usr/include/pcl-1.8/pcl/registration/impl/gicp.hpp:48:1: note: declared here pcl::GeneralizedIterativeClosestPoint<PointSource, PointTarget>::setInputCloud ( ^~~ pcl/_pcl_180.cpp: In function ‘PyObject* __pyx_pf_3pcl_4_pcl_21IterativeClosestPoint_6icp(__pyx_obj_3pcl_4_pcl_IterativeClosestPoint*, __pyx_obj_3pcl_4_pcl_PointCloud*, __pyx_obj_3pcl_4_pcl_PointCloud*, PyObject*)’: pcl/_pcl_180.cpp:59676:59: warning: ‘void pcl::Registration<PointSource, PointTarget, Scalar>::setInputCloud(const PointCloudSourceConstPtr&) [with PointSource = pcl::PointXYZ; PointTarget = pcl::PointXYZ; Scalar = float; pcl::Registration<PointSource, PointTarget, Scalar>::PointCloudSourceConstPtr = boost::shared_ptr<const pcl::PointCloud<pcl::PointXYZ> >]’ is deprecated: [pcl::registration::Registration::setInputCloud] setInputCloud is deprecated. Please use setInputSource instead. [-Wdeprecated-declarations] __pyx_v_icp.setInputCloud(__pyx_v_source->thisptr_shared); ^ In file included from /usr/include/pcl-1.8/pcl/registration/registration.h:607:0, from pcl/_pcl_180.cpp:749: /usr/include/pcl-1.8/pcl/registration/impl/registration.hpp:43:1: note: declared here pcl::Registration<PointSource, PointTarget, Scalar>::setInputCloud ( ^~~ pcl/_pcl_180.cpp: In function ‘PyObject* __pyx_pf_3pcl_4_pcl_30IterativeClosestPointNonLinear_4icp_nl(__pyx_obj_3pcl_4_pcl_IterativeClosestPointNonLinear*, __pyx_obj_3pcl_4_pcl_PointCloud*, __pyx_obj_3pcl_4_pcl_PointCloud*, PyObject*)’: pcl/_pcl_180.cpp:60296:62: warning: ‘void pcl::Registration<PointSource, PointTarget, Scalar>::setInputCloud(const PointCloudSourceConstPtr&) [with PointSource = pcl::PointXYZ; PointTarget = pcl::PointXYZ; Scalar = float; pcl::Registration<PointSource, PointTarget, Scalar>::PointCloudSourceConstPtr = boost::shared_ptr<const pcl::PointCloud<pcl::PointXYZ> >]’ is deprecated: [pcl::registration::Registration::setInputCloud] setInputCloud is deprecated. Please use setInputSource instead. [-Wdeprecated-declarations] __pyx_v_icp_nl.setInputCloud(__pyx_v_source->thisptr_shared); ^ In file included from /usr/include/pcl-1.8/pcl/registration/registration.h:607:0, from pcl/_pcl_180.cpp:749: /usr/include/pcl-1.8/pcl/registration/impl/registration.hpp:43:1: note: declared here pcl::Registration<PointSource, PointTarget, Scalar>::setInputCloud ( ^~~ pcl/_pcl_180.cpp: In function ‘PyObject* __pyx_pf_3pcl_4_pcl_10PointCloud_92make_GeneralizedIterativeClosestPoint(__pyx_obj_3pcl_4_pcl_PointCloud*)’: pcl/_pcl_180.cpp:73721:150: warning: ‘void pcl::GeneralizedIterativeClosestPoint<PointSource, PointTarget>::setInputCloud(const PointCloudSourceConstPtr&) [with PointSource = pcl::PointXYZ; PointTarget = pcl::PointXYZ; pcl::GeneralizedIterativeClosestPoint<PointSource, PointTarget>::PointCloudSourceConstPtr = boost::shared_ptr<const pcl::PointCloud<pcl::PointXYZ> >]’ is deprecated: [pcl::registration::GeneralizedIterativeClosestPoint::setInputCloud] setInputCloud is deprecated. Please use setInputSource instead. [-Wdeprecated-declarations] ed_ptr<pcl::PointCloud<struct pcl::PointXYZ> > )__pyx_v_self->thisptr_shared)); ^ In file included from /usr/include/pcl-1.8/pcl/registration/gicp.h:373:0, from pcl/_pcl_180.cpp:754: /usr/include/pcl-1.8/pcl/registration/impl/gicp.hpp:48:1: note: declared here pcl::GeneralizedIterativeClosestPoint<PointSource, PointTarget>::setInputCloud ( ^~~ pcl/_pcl_180.cpp: In function ‘PyObject* __pyx_pf_3pcl_4_pcl_10PointCloud_94make_IterativeClosestPointNonLinear(__pyx_obj_3pcl_4_pcl_PointCloud*)’: pcl/_pcl_180.cpp:73813:148: warning: ‘void pcl::Registration<PointSource, PointTarget, Scalar>::setInputCloud(const PointCloudSourceConstPtr&) [with PointSource = pcl::PointXYZ; PointTarget = pcl::PointXYZ; Scalar = float; pcl::Registration<PointSource, PointTarget, Scalar>::PointCloudSourceConstPtr = boost::shared_ptr<const pcl::PointCloud<pcl::PointXYZ> >]’ is deprecated: [pcl::registration::Registration::setInputCloud] setInputCloud is deprecated. Please use setInputSource instead. [-Wdeprecated-declarations] ed_ptr<pcl::PointCloud<struct pcl::PointXYZ> > )__pyx_v_self->thisptr_shared)); ^ In file included from /usr/include/pcl-1.8/pcl/registration/registration.h:607:0, from pcl/_pcl_180.cpp:749: /usr/include/pcl-1.8/pcl/registration/impl/registration.hpp:43:1: note: declared here pcl::Registration<PointSource, PointTarget, Scalar>::setInputCloud ( ^~~ pcl/_pcl_180.cpp: In function ‘PyObject* __pyx_pf_3pcl_4_pcl_10PointCloud_96make_IterativeClosestPoint(__pyx_obj_3pcl_4_pcl_PointCloud*)’: pcl/_pcl_180.cpp:73905:139: warning: ‘void pcl::Registration<PointSource, PointTarget, Scalar>::setInputCloud(const PointCloudSourceConstPtr&) [with PointSource = pcl::PointXYZ; PointTarget = pcl::PointXYZ; Scalar = float; pcl::Registration<PointSource, PointTarget, Scalar>::PointCloudSourceConstPtr = boost::shared_ptr<const pcl::PointCloud<pcl::PointXYZ> >]’ is deprecated: [pcl::registration::Registration::setInputCloud] setInputCloud is deprecated. Please use setInputSource instead. [-Wdeprecated-declarations] ed_ptr<pcl::PointCloud<struct pcl::PointXYZ> > )__pyx_v_self->thisptr_shared)); ^ In file included from /usr/include/pcl-1.8/pcl/registration/registration.h:607:0, from pcl/_pcl_180.cpp:749: /usr/include/pcl-1.8/pcl/registration/impl/registration.hpp:43:1: note: declared here pcl::Registration<PointSource, PointTarget, Scalar>::setInputCloud ( ^~~ pcl/_pcl_180.cpp: In function ‘PyObject* __pyx_pf_3pcl_4_pcl_29PointCloud_PointWithViewpoint_12from_list(__pyx_obj_3pcl_4_pcl_PointCloud_PointWithViewpoint*, PyObject*)’: pcl/_pcl_180.cpp:89356:77: warning: variable ‘__pyx_t_8’ set but not used [-Wunused-but-set-variable] _ctuple_float__and_float__and_float__and_float__and_float__and_float __pyx_t_8; ^~~~~~~~~ In file included from /usr/include/pcl-1.8/pcl/sample_consensus/sac_model.h:52:0, from pcl/_pcl_180.cpp:635: /usr/include/pcl-1.8/pcl/sample_consensus/model_types.h: In function ‘void __static_initialization_and_destruction_0(int, int)’: /usr/include/pcl-1.8/pcl/sample_consensus/model_types.h:99:3: warning: ‘pcl::SAC_SAMPLE_SIZE’ is deprecated: This map is deprecated and is kept only to prevent breaking existing user code. Starting from PCL 1.8.0 model sample size is a protected member of the SampleConsensusModel class [-Wdeprecated-declarations] SAC_SAMPLE_SIZE (sample_size_pairs, sample_size_pairs + sizeof (sample_size_pairs) / sizeof (SampleSizeModel)); ^~~~~~~~~~~~~~~ /usr/include/pcl-1.8/pcl/sample_consensus/model_types.h:99:3: note: declared here pcl/_pcl_180.cpp: In function ‘PyObject* __pyx_pw_3pcl_4_pcl_8Vertices_7to_array(PyObject*, PyObject*)’: pcl/_pcl_180.cpp:117574:33: warning: ‘<anonymous>’ may be used uninitialized in this function [-Wmaybe-uninitialized] return PyInt_FromSize_t(ival); ^ pcl/_pcl_180.cpp:15519:93: note: ‘<anonymous>’ was declared here 4 = __pyx_f_3pcl_4_pcl_8Vertices_thisptr(__pyx_v_self)->vertices.at(__pyx_v_i); ^ aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DEIGEN_YES_I_KNOW_SPARSE_MODULE_IS_NOT_STABLE_YET=1 -I/usr/local/lib/python3.6/dist-packages/numpy/core/include -I/usr/include/pcl-1.8 -I/usr/include/ni -I/usr/include/openni2 -I/usr/include/eigen3 -I/usr/include/ni -I/usr/include/openni2 -I/usr/include/vtk-7.0 -I/usr/include/python3.6m -c pcl/minipcl.cpp -o build/temp.linux-aarch64-3.6/pcl/minipcl.o -std=c++11 In file included from /usr/include/pcl-1.8/pcl/sample_consensus/sac_model.h:52:0, from /usr/include/pcl-1.8/pcl/sample_consensus/sac.h:45, from /usr/include/pcl-1.8/pcl/segmentation/sac_segmentation.h:49, from pcl/minipcl.h:5, from pcl/minipcl.cpp:14: /usr/include/pcl-1.8/pcl/sample_consensus/model_types.h: In function ‘void __static_initialization_and_destruction_0(int, int)’: /usr/include/pcl-1.8/pcl/sample_consensus/model_types.h:99:3: warning: ‘pcl::SAC_SAMPLE_SIZE’ is deprecated: This map is deprecated and is kept only to prevent breaking existing user code. Starting from PCL 1.8.0 model sample size is a protected member of the SampleConsensusModel class [-Wdeprecated-declarations] SAC_SAMPLE_SIZE (sample_size_pairs, sample_size_pairs + sizeof (sample_size_pairs) / sizeof (SampleSizeModel)); ^~~~~~~~~~~~~~~ /usr/include/pcl-1.8/pcl/sample_consensus/model_types.h:99:3: note: declared here aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DEIGEN_YES_I_KNOW_SPARSE_MODULE_IS_NOT_STABLE_YET=1 -I/usr/local/lib/python3.6/dist-packages/numpy/core/include -I/usr/include/pcl-1.8 -I/usr/include/ni -I/usr/include/openni2 -I/usr/include/eigen3 -I/usr/include/ni -I/usr/include/openni2 -I/usr/include/vtk-7.0 -I/usr/include/python3.6m -c pcl/ProjectInliers.cpp -o build/temp.linux-aarch64-3.6/pcl/ProjectInliers.o -std=c++11 In file included from /usr/include/pcl-1.8/pcl/filters/project_inliers.h:45:0, from pcl/ProjectInliers.h:6, from pcl/ProjectInliers.cpp:3: /usr/include/pcl-1.8/pcl/sample_consensus/model_types.h: In function ‘void __static_initialization_and_destruction_0(int, int)’: /usr/include/pcl-1.8/pcl/sample_consensus/model_types.h:99:3: warning: ‘pcl::SAC_SAMPLE_SIZE’ is deprecated: This map is deprecated and is kept only to prevent breaking existing user code. Starting from PCL 1.8.0 model sample size is a protected member of the SampleConsensusModel class [-Wdeprecated-declarations] SAC_SAMPLE_SIZE (sample_size_pairs, sample_size_pairs + sizeof (sample_size_pairs) / sizeof (SampleSizeModel)); ^~~~~~~~~~~~~~~ /usr/include/pcl-1.8/pcl/sample_consensus/model_types.h:99:3: note: declared here aarch64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-3.6/pcl/_pcl_180.o build/temp.linux-aarch64-3.6/pcl/minipcl.o build/temp.linux-aarch64-3.6/pcl/ProjectInliers.o -L/usr/lib/x86_64-linux-gnu/ -lvtkalglib-7.0 -lvtkChartsCore-7.0 -lvtkCommonColor-7.0 -lvtkCommonComputationalGeometry-7.0 -lvtkCommonCore-7.0 -lvtkCommonDataModel-7.0 -lvtkCommonExecutionModel-7.0 -lvtkCommonMath-7.0 -lvtkCommonMisc-7.0 -lvtkCommonSystem-7.0 -lvtkCommonTransforms-7.0 -lvtkDICOMParser-7.0 -lvtkDomainsChemistry-7.0 -lvtkexoIIc-7.0 -lvtkexpat-7.0 -lvtkFiltersAMR-7.0 -lvtkFiltersCore-7.0 -lvtkFiltersExtraction-7.0 -lvtkFiltersFlowPaths-7.0 -lvtkFiltersGeneral-7.0 -lvtkFiltersGeneric-7.0 -lvtkFiltersGeometry-7.0 -lvtkFiltersHybrid-7.0 -lvtkFiltersHyperTree-7.0 -lvtkFiltersImaging-7.0 -lvtkFiltersModeling-7.0 -lvtkFiltersParallel-7.0 -lvtkFiltersParallelImaging-7.0 -lvtkFiltersProgrammable-7.0 -lvtkFiltersSelection-7.0 -lvtkFiltersSMP-7.0 -lvtkFiltersSources-7.0 -lvtkFiltersStatistics-7.0 -lvtkFiltersTexture-7.0 -lvtkFiltersVerdict-7.0 -lvtkfreetype-7.0 -lvtkGeovisCore-7.0 -lvtkgl2ps-7.0 -lvtkhdf5-7.0 -lvtkhdf5_hl-7.0 -lvtkImagingColor-7.0 -lvtkImagingCore-7.0 -lvtkImagingFourier-7.0 -lvtkImagingGeneral-7.0 -lvtkImagingHybrid-7.0 -lvtkImagingMath-7.0 -lvtkImagingMorphological-7.0 -lvtkImagingSources-7.0 -lvtkImagingStatistics-7.0 -lvtkImagingStencil-7.0 -lvtkInfovisCore-7.0 -lvtkInfovisLayout-7.0 -lvtkInteractionImage-7.0 -lvtkInteractionStyle-7.0 -lvtkInteractionWidgets-7.0 -lvtkIOAMR-7.0 -lvtkIOCore-7.0 -lvtkIOEnSight-7.0 -lvtkIOExodus-7.0 -lvtkIOExport-7.0 -lvtkIOGeometry-7.0 -lvtkIOImage-7.0 -lvtkIOImport-7.0 -lvtkIOInfovis-7.0 -lvtkIOLegacy-7.0 -lvtkIOLSDyna-7.0 -lvtkIOMINC-7.0 -lvtkIOMovie-7.0 -lvtkIONetCDF-7.0 -lvtkIOParallel-7.0 -lvtkIOParallelXML-7.0 -lvtkIOPLY-7.0 -lvtkIOSQL-7.0 -lvtkIOVideo-7.0 -lvtkIOXML-7.0 -lvtkIOXMLParser-7.0 -lvtkjpeg-7.0 -lvtkjsoncpp-7.0 -lvtklibxml2-7.0 -lvtkmetaio-7.0 -lvtkNetCDF-7.0 -lvtkoggtheora-7.0 -lvtkParallelCore-7.0 -lvtkpng-7.0 -lvtkproj4-7.0 -lvtkRenderingAnnotation-7.0 -lvtkRenderingContext2D-7.0 -lvtkRenderingContextOpenGL-7.0 -lvtkRenderingCore-7.0 -lvtkRenderingFreeType-7.0 -lvtkRenderingGL2PS-7.0 -lvtkRenderingImage-7.0 -lvtkRenderingLabel-7.0 -lvtkRenderingLIC-7.0 -lvtkRenderingLOD-7.0 -lvtkRenderingOpenGL-7.0 -lvtkRenderingVolume-7.0 -lvtkRenderingVolumeOpenGL-7.0 -lvtksqlite-7.0 -lvtksys-7.0 -lvtktiff-7.0 -lvtkverdict-7.0 -lvtkViewsContext2D-7.0 -lvtkViewsCore-7.0 -lvtkViewsInfovis-7.0 -lvtkzlib-7.0 -lpcl_keypoints -lpcl_outofcore -lpcl_people -lpcl_recognition -lpcl_registration -lpcl_segmentation -lpcl_features -lpcl_ml -lpcl_stereo -lpcl_surface -lpcl_tracking -lpcl_filters -lpcl_sample_consensus -lpcl_visualization -lpcl_io -lOpenNI -lOpenNI2 -lpcl_search -lpcl_kdtree -lflann -lflann_cpp -lpcl_octree -lpcl_common -o build/lib.linux-aarch64-3.6/pcl/_pcl.cpython-36m-aarch64-linux-gnu.so /usr/bin/ld: cannot find -lvtkalglib-7.0 /usr/bin/ld: cannot find -lvtkChartsCore-7.0 /usr/bin/ld: cannot find -lvtkCommonColor-7.0 /usr/bin/ld: cannot find -lvtkCommonComputationalGeometry-7.0 /usr/bin/ld: cannot find -lvtkCommonCore-7.0 /usr/bin/ld: cannot find -lvtkCommonDataModel-7.0 /usr/bin/ld: cannot find -lvtkCommonExecutionModel-7.0 /usr/bin/ld: cannot find -lvtkCommonMath-7.0 /usr/bin/ld: cannot find -lvtkCommonMisc-7.0 /usr/bin/ld: cannot find -lvtkCommonSystem-7.0 /usr/bin/ld: cannot find -lvtkCommonTransforms-7.0 /usr/bin/ld: cannot find -lvtkDICOMParser-7.0 /usr/bin/ld: cannot find -lvtkDomainsChemistry-7.0 /usr/bin/ld: cannot find -lvtkexoIIc-7.0 /usr/bin/ld: cannot find -lvtkexpat-7.0 /usr/bin/ld: cannot find -lvtkFiltersAMR-7.0 /usr/bin/ld: cannot find -lvtkFiltersCore-7.0 /usr/bin/ld: cannot find -lvtkFiltersExtraction-7.0 /usr/bin/ld: cannot find -lvtkFiltersFlowPaths-7.0 /usr/bin/ld: cannot find -lvtkFiltersGeneral-7.0 /usr/bin/ld: cannot find -lvtkFiltersGeneric-7.0 /usr/bin/ld: cannot find -lvtkFiltersGeometry-7.0 /usr/bin/ld: cannot find -lvtkFiltersHybrid-7.0 /usr/bin/ld: cannot find -lvtkFiltersHyperTree-7.0 /usr/bin/ld: cannot find -lvtkFiltersImaging-7.0 /usr/bin/ld: cannot find -lvtkFiltersModeling-7.0 /usr/bin/ld: cannot find -lvtkFiltersParallel-7.0 /usr/bin/ld: cannot find -lvtkFiltersParallelImaging-7.0 /usr/bin/ld: cannot find -lvtkFiltersProgrammable-7.0 /usr/bin/ld: cannot find -lvtkFiltersSelection-7.0 /usr/bin/ld: cannot find -lvtkFiltersSMP-7.0 /usr/bin/ld: cannot find -lvtkFiltersSources-7.0 /usr/bin/ld: cannot find -lvtkFiltersStatistics-7.0 /usr/bin/ld: cannot find -lvtkFiltersTexture-7.0 /usr/bin/ld: cannot find -lvtkFiltersVerdict-7.0 /usr/bin/ld: cannot find -lvtkfreetype-7.0 /usr/bin/ld: cannot find -lvtkGeovisCore-7.0 /usr/bin/ld: cannot find -lvtkgl2ps-7.0 /usr/bin/ld: cannot find -lvtkhdf5-7.0 /usr/bin/ld: cannot find -lvtkhdf5_hl-7.0 /usr/bin/ld: cannot find -lvtkImagingColor-7.0 /usr/bin/ld: cannot find -lvtkImagingCore-7.0 /usr/bin/ld: cannot find -lvtkImagingFourier-7.0 /usr/bin/ld: cannot find -lvtkImagingGeneral-7.0 /usr/bin/ld: cannot find -lvtkImagingHybrid-7.0 /usr/bin/ld: cannot find -lvtkImagingMath-7.0 /usr/bin/ld: cannot find -lvtkImagingMorphological-7.0 /usr/bin/ld: cannot find -lvtkImagingSources-7.0 /usr/bin/ld: cannot find -lvtkImagingStatistics-7.0 /usr/bin/ld: cannot find -lvtkImagingStencil-7.0 /usr/bin/ld: cannot find -lvtkInfovisCore-7.0 /usr/bin/ld: cannot find -lvtkInfovisLayout-7.0 /usr/bin/ld: cannot find -lvtkInteractionImage-7.0 /usr/bin/ld: cannot find -lvtkInteractionStyle-7.0 /usr/bin/ld: cannot find -lvtkInteractionWidgets-7.0 /usr/bin/ld: cannot find -lvtkIOAMR-7.0 /usr/bin/ld: cannot find -lvtkIOCore-7.0 /usr/bin/ld: cannot find -lvtkIOEnSight-7.0 /usr/bin/ld: cannot find -lvtkIOExodus-7.0 /usr/bin/ld: cannot find -lvtkIOExport-7.0 /usr/bin/ld: cannot find -lvtkIOGeometry-7.0 /usr/bin/ld: cannot find -lvtkIOImage-7.0 /usr/bin/ld: cannot find -lvtkIOImport-7.0 /usr/bin/ld: cannot find -lvtkIOInfovis-7.0 /usr/bin/ld: cannot find -lvtkIOLegacy-7.0 /usr/bin/ld: cannot find -lvtkIOLSDyna-7.0 /usr/bin/ld: cannot find -lvtkIOMINC-7.0 /usr/bin/ld: cannot find -lvtkIOMovie-7.0 /usr/bin/ld: cannot find -lvtkIONetCDF-7.0 /usr/bin/ld: cannot find -lvtkIOParallel-7.0 /usr/bin/ld: cannot find -lvtkIOParallelXML-7.0 /usr/bin/ld: cannot find -lvtkIOPLY-7.0 /usr/bin/ld: cannot find -lvtkIOSQL-7.0 /usr/bin/ld: cannot find -lvtkIOVideo-7.0 /usr/bin/ld: cannot find -lvtkIOXML-7.0 /usr/bin/ld: cannot find -lvtkIOXMLParser-7.0 /usr/bin/ld: cannot find -lvtkjpeg-7.0 /usr/bin/ld: cannot find -lvtkjsoncpp-7.0 /usr/bin/ld: cannot find -lvtklibxml2-7.0 /usr/bin/ld: cannot find -lvtkmetaio-7.0 /usr/bin/ld: cannot find -lvtkNetCDF-7.0 /usr/bin/ld: cannot find -lvtkoggtheora-7.0 /usr/bin/ld: cannot find -lvtkParallelCore-7.0 /usr/bin/ld: cannot find -lvtkpng-7.0 /usr/bin/ld: cannot find -lvtkproj4-7.0 /usr/bin/ld: cannot find -lvtkRenderingAnnotation-7.0 /usr/bin/ld: cannot find -lvtkRenderingContext2D-7.0 /usr/bin/ld: cannot find -lvtkRenderingContextOpenGL-7.0 /usr/bin/ld: cannot find -lvtkRenderingCore-7.0 /usr/bin/ld: cannot find -lvtkRenderingFreeType-7.0 /usr/bin/ld: cannot find -lvtkRenderingGL2PS-7.0 /usr/bin/ld: cannot find -lvtkRenderingImage-7.0 /usr/bin/ld: cannot find -lvtkRenderingLabel-7.0 /usr/bin/ld: cannot find -lvtkRenderingLIC-7.0 /usr/bin/ld: cannot find -lvtkRenderingLOD-7.0 /usr/bin/ld: cannot find -lvtkRenderingOpenGL-7.0 /usr/bin/ld: cannot find -lvtkRenderingVolume-7.0 /usr/bin/ld: cannot find -lvtkRenderingVolumeOpenGL-7.0 /usr/bin/ld: cannot find -lvtksqlite-7.0 /usr/bin/ld: cannot find -lvtksys-7.0 /usr/bin/ld: cannot find -lvtktiff-7.0 /usr/bin/ld: cannot find -lvtkverdict-7.0 /usr/bin/ld: cannot find -lvtkViewsContext2D-7.0 /usr/bin/ld: cannot find -lvtkViewsCore-7.0 /usr/bin/ld: cannot find -lvtkViewsInfovis-7.0 /usr/bin/ld: cannot find -lvtkzlib-7.0 collect2: error: ld returned 1 exit status error: command 'aarch64-linux-gnu-g++' failed with exit status 1

  • Operating System and version: Ubuntu 18.04
  • Compiler:
  • PCL Version:
  • Cython Version: 0.25.2 also tried with the latest version

Please help!

hannibal-paul avatar Jun 08 '19 17:06 hannibal-paul

I have installed PCL library in my Jetson TX2 running Ubuntu 18.04.

I am getting error when I tried to setup python-pcl.

sudo python3 setup.py install running install running bdist_egg running egg_info writing python_pcl.egg-info/PKG-INFO writing dependency_links to python_pcl.egg-info/dependency_links.txt writing requirements to python_pcl.egg-info/requires.txt writing top-level names to python_pcl.egg-info/top_level.txt reading manifest file 'python_pcl.egg-info/SOURCES.txt' writing manifest file 'python_pcl.egg-info/SOURCES.txt' installing library code to build/bdist.linux-aarch64/egg running install_lib running build_py running build_ext skipping 'pcl/_pcl_180.cpp' Cython extension (up-to-date) building 'pcl._pcl' extension aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DEIGEN_YES_I_KNOW_SPARSE_MODULE_IS_NOT_STABLE_YET=1 -I/usr/local/lib/python3.6/dist-packages/numpy/core/include -I/usr/include/pcl-1.8 -I/usr/include/ni -I/usr/include/openni2 -I/usr/include/eigen3 -I/usr/include/ni -I/usr/include/openni2 -I/usr/include/vtk-7.0 -I/usr/include/python3.6m -c pcl/_pcl_180.cpp -o build/temp.linux-aarch64-3.6/pcl/_pcl_180.o -std=c++11 In file included from /usr/local/lib/python3.6/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822:0, from /usr/local/lib/python3.6/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.6/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from pcl/_pcl_180.cpp:661: /usr/local/lib/python3.6/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ In file included from pcl/_pcl_180.cpp:798:0: /usr/include/pcl-1.8/pcl/keypoints/uniform_sampling.h:44:2: warning: #warning UniformSampling is not a Keypoint anymore, use <pcl/filters/uniform_sampling.h> instead. [-Wcpp] #warning UniformSampling is not a Keypoint anymore, use <pcl/filters/uniform_sampling.h> instead. ^~~~~~~ pcl/_pcl_180.cpp: In function ‘int __pyx_pf_3pcl_4_pcl_18ConditionalRemoval___cinit__(__pyx_obj_3pcl_4_pcl_ConditionalRemoval*, __pyx_obj_3pcl_4_pcl_ConditionAnd*)’: pcl/_pcl_180.cpp:54593:153: warning: ‘pcl::ConditionalRemoval<PointT>::ConditionalRemoval(pcl::ConditionalRemoval<PointT>::ConditionBasePtr, bool) [with PointT = pcl::PointXYZ; pcl::ConditionalRemoval<PointT>::ConditionBasePtr = boost::shared_ptr<pcl::ConditionBase<pcl::PointXYZ> >]’ is deprecated: ConditionalRemoval(ConditionBasePtr condition, bool extract_removed_indices = false) is deprecated, please use the setCondition (ConditionBasePtr condition) function instead. [-Wdeprecated-declarations] t(((__pyx_t_3pcl_15pcl_filters_180_ConditionBasePtr_t)__pyx_v_cond->me), NULL); ^ In file included from pcl/_pcl_180.cpp:703:0: /usr/include/pcl-1.8/pcl/filters/conditional_removal.h:632:7: note: declared here ConditionalRemoval (ConditionBasePtr condition, bool extract_removed_indices = false) : ^~~~~~~~~~~~~~~~~~ pcl/_pcl_180.cpp: In function ‘PyObject* __pyx_pf_3pcl_4_pcl_32GeneralizedIterativeClosestPoint_4gicp(__pyx_obj_3pcl_4_pcl_GeneralizedIterativeClosestPoint*, __pyx_obj_3pcl_4_pcl_PointCloud*, __pyx_obj_3pcl_4_pcl_PointCloud*, PyObject*)’: pcl/_pcl_180.cpp:59000:60: warning: ‘void pcl::GeneralizedIterativeClosestPoint<PointSource, PointTarget>::setInputCloud(const PointCloudSourceConstPtr&) [with PointSource = pcl::PointXYZ; PointTarget = pcl::PointXYZ; pcl::GeneralizedIterativeClosestPoint<PointSource, PointTarget>::PointCloudSourceConstPtr = boost::shared_ptr<const pcl::PointCloud<pcl::PointXYZ> >]’ is deprecated: [pcl::registration::GeneralizedIterativeClosestPoint::setInputCloud] setInputCloud is deprecated. Please use setInputSource instead. [-Wdeprecated-declarations] __pyx_v_gicp.setInputCloud(__pyx_v_source->thisptr_shared); ^ In file included from /usr/include/pcl-1.8/pcl/registration/gicp.h:373:0, from pcl/_pcl_180.cpp:754: /usr/include/pcl-1.8/pcl/registration/impl/gicp.hpp:48:1: note: declared here pcl::GeneralizedIterativeClosestPoint<PointSource, PointTarget>::setInputCloud ( ^~~ pcl/_pcl_180.cpp: In function ‘PyObject* __pyx_pf_3pcl_4_pcl_21IterativeClosestPoint_6icp(__pyx_obj_3pcl_4_pcl_IterativeClosestPoint*, __pyx_obj_3pcl_4_pcl_PointCloud*, __pyx_obj_3pcl_4_pcl_PointCloud*, PyObject*)’: pcl/_pcl_180.cpp:59676:59: warning: ‘void pcl::Registration<PointSource, PointTarget, Scalar>::setInputCloud(const PointCloudSourceConstPtr&) [with PointSource = pcl::PointXYZ; PointTarget = pcl::PointXYZ; Scalar = float; pcl::Registration<PointSource, PointTarget, Scalar>::PointCloudSourceConstPtr = boost::shared_ptr<const pcl::PointCloud<pcl::PointXYZ> >]’ is deprecated: [pcl::registration::Registration::setInputCloud] setInputCloud is deprecated. Please use setInputSource instead. [-Wdeprecated-declarations] __pyx_v_icp.setInputCloud(__pyx_v_source->thisptr_shared); ^ In file included from /usr/include/pcl-1.8/pcl/registration/registration.h:607:0, from pcl/_pcl_180.cpp:749: /usr/include/pcl-1.8/pcl/registration/impl/registration.hpp:43:1: note: declared here pcl::Registration<PointSource, PointTarget, Scalar>::setInputCloud ( ^~~ pcl/_pcl_180.cpp: In function ‘PyObject* __pyx_pf_3pcl_4_pcl_30IterativeClosestPointNonLinear_4icp_nl(__pyx_obj_3pcl_4_pcl_IterativeClosestPointNonLinear*, __pyx_obj_3pcl_4_pcl_PointCloud*, __pyx_obj_3pcl_4_pcl_PointCloud*, PyObject*)’: pcl/_pcl_180.cpp:60296:62: warning: ‘void pcl::Registration<PointSource, PointTarget, Scalar>::setInputCloud(const PointCloudSourceConstPtr&) [with PointSource = pcl::PointXYZ; PointTarget = pcl::PointXYZ; Scalar = float; pcl::Registration<PointSource, PointTarget, Scalar>::PointCloudSourceConstPtr = boost::shared_ptr<const pcl::PointCloud<pcl::PointXYZ> >]’ is deprecated: [pcl::registration::Registration::setInputCloud] setInputCloud is deprecated. Please use setInputSource instead. [-Wdeprecated-declarations] __pyx_v_icp_nl.setInputCloud(__pyx_v_source->thisptr_shared); ^ In file included from /usr/include/pcl-1.8/pcl/registration/registration.h:607:0, from pcl/_pcl_180.cpp:749: /usr/include/pcl-1.8/pcl/registration/impl/registration.hpp:43:1: note: declared here pcl::Registration<PointSource, PointTarget, Scalar>::setInputCloud ( ^~~ pcl/_pcl_180.cpp: In function ‘PyObject* __pyx_pf_3pcl_4_pcl_10PointCloud_92make_GeneralizedIterativeClosestPoint(__pyx_obj_3pcl_4_pcl_PointCloud*)’: pcl/_pcl_180.cpp:73721:150: warning: ‘void pcl::GeneralizedIterativeClosestPoint<PointSource, PointTarget>::setInputCloud(const PointCloudSourceConstPtr&) [with PointSource = pcl::PointXYZ; PointTarget = pcl::PointXYZ; pcl::GeneralizedIterativeClosestPoint<PointSource, PointTarget>::PointCloudSourceConstPtr = boost::shared_ptr<const pcl::PointCloud<pcl::PointXYZ> >]’ is deprecated: [pcl::registration::GeneralizedIterativeClosestPoint::setInputCloud] setInputCloud is deprecated. Please use setInputSource instead. [-Wdeprecated-declarations] ed_ptr<pcl::PointCloud<struct pcl::PointXYZ> > )__pyx_v_self->thisptr_shared)); ^ In file included from /usr/include/pcl-1.8/pcl/registration/gicp.h:373:0, from pcl/_pcl_180.cpp:754: /usr/include/pcl-1.8/pcl/registration/impl/gicp.hpp:48:1: note: declared here pcl::GeneralizedIterativeClosestPoint<PointSource, PointTarget>::setInputCloud ( ^~~ pcl/_pcl_180.cpp: In function ‘PyObject* __pyx_pf_3pcl_4_pcl_10PointCloud_94make_IterativeClosestPointNonLinear(__pyx_obj_3pcl_4_pcl_PointCloud*)’: pcl/_pcl_180.cpp:73813:148: warning: ‘void pcl::Registration<PointSource, PointTarget, Scalar>::setInputCloud(const PointCloudSourceConstPtr&) [with PointSource = pcl::PointXYZ; PointTarget = pcl::PointXYZ; Scalar = float; pcl::Registration<PointSource, PointTarget, Scalar>::PointCloudSourceConstPtr = boost::shared_ptr<const pcl::PointCloud<pcl::PointXYZ> >]’ is deprecated: [pcl::registration::Registration::setInputCloud] setInputCloud is deprecated. Please use setInputSource instead. [-Wdeprecated-declarations] ed_ptr<pcl::PointCloud<struct pcl::PointXYZ> > )__pyx_v_self->thisptr_shared)); ^ In file included from /usr/include/pcl-1.8/pcl/registration/registration.h:607:0, from pcl/_pcl_180.cpp:749: /usr/include/pcl-1.8/pcl/registration/impl/registration.hpp:43:1: note: declared here pcl::Registration<PointSource, PointTarget, Scalar>::setInputCloud ( ^~~ pcl/_pcl_180.cpp: In function ‘PyObject* __pyx_pf_3pcl_4_pcl_10PointCloud_96make_IterativeClosestPoint(__pyx_obj_3pcl_4_pcl_PointCloud*)’: pcl/_pcl_180.cpp:73905:139: warning: ‘void pcl::Registration<PointSource, PointTarget, Scalar>::setInputCloud(const PointCloudSourceConstPtr&) [with PointSource = pcl::PointXYZ; PointTarget = pcl::PointXYZ; Scalar = float; pcl::Registration<PointSource, PointTarget, Scalar>::PointCloudSourceConstPtr = boost::shared_ptr<const pcl::PointCloud<pcl::PointXYZ> >]’ is deprecated: [pcl::registration::Registration::setInputCloud] setInputCloud is deprecated. Please use setInputSource instead. [-Wdeprecated-declarations] ed_ptr<pcl::PointCloud<struct pcl::PointXYZ> > )__pyx_v_self->thisptr_shared)); ^ In file included from /usr/include/pcl-1.8/pcl/registration/registration.h:607:0, from pcl/_pcl_180.cpp:749: /usr/include/pcl-1.8/pcl/registration/impl/registration.hpp:43:1: note: declared here pcl::Registration<PointSource, PointTarget, Scalar>::setInputCloud ( ^~~ pcl/_pcl_180.cpp: In function ‘PyObject* __pyx_pf_3pcl_4_pcl_29PointCloud_PointWithViewpoint_12from_list(__pyx_obj_3pcl_4_pcl_PointCloud_PointWithViewpoint*, PyObject*)’: pcl/_pcl_180.cpp:89356:77: warning: variable ‘__pyx_t_8’ set but not used [-Wunused-but-set-variable] _ctuple_float__and_float__and_float__and_float__and_float__and_float __pyx_t_8; ^~~~~~~~~ In file included from /usr/include/pcl-1.8/pcl/sample_consensus/sac_model.h:52:0, from pcl/_pcl_180.cpp:635: /usr/include/pcl-1.8/pcl/sample_consensus/model_types.h: In function ‘void __static_initialization_and_destruction_0(int, int)’: /usr/include/pcl-1.8/pcl/sample_consensus/model_types.h:99:3: warning: ‘pcl::SAC_SAMPLE_SIZE’ is deprecated: This map is deprecated and is kept only to prevent breaking existing user code. Starting from PCL 1.8.0 model sample size is a protected member of the SampleConsensusModel class [-Wdeprecated-declarations] SAC_SAMPLE_SIZE (sample_size_pairs, sample_size_pairs + sizeof (sample_size_pairs) / sizeof (SampleSizeModel)); ^~~~~~~~~~~~~~~ /usr/include/pcl-1.8/pcl/sample_consensus/model_types.h:99:3: note: declared here pcl/_pcl_180.cpp: In function ‘PyObject* __pyx_pw_3pcl_4_pcl_8Vertices_7to_array(PyObject*, PyObject*)’: pcl/_pcl_180.cpp:117574:33: warning: ‘<anonymous>’ may be used uninitialized in this function [-Wmaybe-uninitialized] return PyInt_FromSize_t(ival); ^ pcl/_pcl_180.cpp:15519:93: note: ‘<anonymous>’ was declared here 4 = __pyx_f_3pcl_4_pcl_8Vertices_thisptr(__pyx_v_self)->vertices.at(__pyx_v_i); ^ aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DEIGEN_YES_I_KNOW_SPARSE_MODULE_IS_NOT_STABLE_YET=1 -I/usr/local/lib/python3.6/dist-packages/numpy/core/include -I/usr/include/pcl-1.8 -I/usr/include/ni -I/usr/include/openni2 -I/usr/include/eigen3 -I/usr/include/ni -I/usr/include/openni2 -I/usr/include/vtk-7.0 -I/usr/include/python3.6m -c pcl/minipcl.cpp -o build/temp.linux-aarch64-3.6/pcl/minipcl.o -std=c++11 In file included from /usr/include/pcl-1.8/pcl/sample_consensus/sac_model.h:52:0, from /usr/include/pcl-1.8/pcl/sample_consensus/sac.h:45, from /usr/include/pcl-1.8/pcl/segmentation/sac_segmentation.h:49, from pcl/minipcl.h:5, from pcl/minipcl.cpp:14: /usr/include/pcl-1.8/pcl/sample_consensus/model_types.h: In function ‘void __static_initialization_and_destruction_0(int, int)’: /usr/include/pcl-1.8/pcl/sample_consensus/model_types.h:99:3: warning: ‘pcl::SAC_SAMPLE_SIZE’ is deprecated: This map is deprecated and is kept only to prevent breaking existing user code. Starting from PCL 1.8.0 model sample size is a protected member of the SampleConsensusModel class [-Wdeprecated-declarations] SAC_SAMPLE_SIZE (sample_size_pairs, sample_size_pairs + sizeof (sample_size_pairs) / sizeof (SampleSizeModel)); ^~~~~~~~~~~~~~~ /usr/include/pcl-1.8/pcl/sample_consensus/model_types.h:99:3: note: declared here aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DEIGEN_YES_I_KNOW_SPARSE_MODULE_IS_NOT_STABLE_YET=1 -I/usr/local/lib/python3.6/dist-packages/numpy/core/include -I/usr/include/pcl-1.8 -I/usr/include/ni -I/usr/include/openni2 -I/usr/include/eigen3 -I/usr/include/ni -I/usr/include/openni2 -I/usr/include/vtk-7.0 -I/usr/include/python3.6m -c pcl/ProjectInliers.cpp -o build/temp.linux-aarch64-3.6/pcl/ProjectInliers.o -std=c++11 In file included from /usr/include/pcl-1.8/pcl/filters/project_inliers.h:45:0, from pcl/ProjectInliers.h:6, from pcl/ProjectInliers.cpp:3: /usr/include/pcl-1.8/pcl/sample_consensus/model_types.h: In function ‘void __static_initialization_and_destruction_0(int, int)’: /usr/include/pcl-1.8/pcl/sample_consensus/model_types.h:99:3: warning: ‘pcl::SAC_SAMPLE_SIZE’ is deprecated: This map is deprecated and is kept only to prevent breaking existing user code. Starting from PCL 1.8.0 model sample size is a protected member of the SampleConsensusModel class [-Wdeprecated-declarations] SAC_SAMPLE_SIZE (sample_size_pairs, sample_size_pairs + sizeof (sample_size_pairs) / sizeof (SampleSizeModel)); ^~~~~~~~~~~~~~~ /usr/include/pcl-1.8/pcl/sample_consensus/model_types.h:99:3: note: declared here aarch64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-3.6/pcl/_pcl_180.o build/temp.linux-aarch64-3.6/pcl/minipcl.o build/temp.linux-aarch64-3.6/pcl/ProjectInliers.o -L/usr/lib/x86_64-linux-gnu/ -lvtkalglib-7.0 -lvtkChartsCore-7.0 -lvtkCommonColor-7.0 -lvtkCommonComputationalGeometry-7.0 -lvtkCommonCore-7.0 -lvtkCommonDataModel-7.0 -lvtkCommonExecutionModel-7.0 -lvtkCommonMath-7.0 -lvtkCommonMisc-7.0 -lvtkCommonSystem-7.0 -lvtkCommonTransforms-7.0 -lvtkDICOMParser-7.0 -lvtkDomainsChemistry-7.0 -lvtkexoIIc-7.0 -lvtkexpat-7.0 -lvtkFiltersAMR-7.0 -lvtkFiltersCore-7.0 -lvtkFiltersExtraction-7.0 -lvtkFiltersFlowPaths-7.0 -lvtkFiltersGeneral-7.0 -lvtkFiltersGeneric-7.0 -lvtkFiltersGeometry-7.0 -lvtkFiltersHybrid-7.0 -lvtkFiltersHyperTree-7.0 -lvtkFiltersImaging-7.0 -lvtkFiltersModeling-7.0 -lvtkFiltersParallel-7.0 -lvtkFiltersParallelImaging-7.0 -lvtkFiltersProgrammable-7.0 -lvtkFiltersSelection-7.0 -lvtkFiltersSMP-7.0 -lvtkFiltersSources-7.0 -lvtkFiltersStatistics-7.0 -lvtkFiltersTexture-7.0 -lvtkFiltersVerdict-7.0 -lvtkfreetype-7.0 -lvtkGeovisCore-7.0 -lvtkgl2ps-7.0 -lvtkhdf5-7.0 -lvtkhdf5_hl-7.0 -lvtkImagingColor-7.0 -lvtkImagingCore-7.0 -lvtkImagingFourier-7.0 -lvtkImagingGeneral-7.0 -lvtkImagingHybrid-7.0 -lvtkImagingMath-7.0 -lvtkImagingMorphological-7.0 -lvtkImagingSources-7.0 -lvtkImagingStatistics-7.0 -lvtkImagingStencil-7.0 -lvtkInfovisCore-7.0 -lvtkInfovisLayout-7.0 -lvtkInteractionImage-7.0 -lvtkInteractionStyle-7.0 -lvtkInteractionWidgets-7.0 -lvtkIOAMR-7.0 -lvtkIOCore-7.0 -lvtkIOEnSight-7.0 -lvtkIOExodus-7.0 -lvtkIOExport-7.0 -lvtkIOGeometry-7.0 -lvtkIOImage-7.0 -lvtkIOImport-7.0 -lvtkIOInfovis-7.0 -lvtkIOLegacy-7.0 -lvtkIOLSDyna-7.0 -lvtkIOMINC-7.0 -lvtkIOMovie-7.0 -lvtkIONetCDF-7.0 -lvtkIOParallel-7.0 -lvtkIOParallelXML-7.0 -lvtkIOPLY-7.0 -lvtkIOSQL-7.0 -lvtkIOVideo-7.0 -lvtkIOXML-7.0 -lvtkIOXMLParser-7.0 -lvtkjpeg-7.0 -lvtkjsoncpp-7.0 -lvtklibxml2-7.0 -lvtkmetaio-7.0 -lvtkNetCDF-7.0 -lvtkoggtheora-7.0 -lvtkParallelCore-7.0 -lvtkpng-7.0 -lvtkproj4-7.0 -lvtkRenderingAnnotation-7.0 -lvtkRenderingContext2D-7.0 -lvtkRenderingContextOpenGL-7.0 -lvtkRenderingCore-7.0 -lvtkRenderingFreeType-7.0 -lvtkRenderingGL2PS-7.0 -lvtkRenderingImage-7.0 -lvtkRenderingLabel-7.0 -lvtkRenderingLIC-7.0 -lvtkRenderingLOD-7.0 -lvtkRenderingOpenGL-7.0 -lvtkRenderingVolume-7.0 -lvtkRenderingVolumeOpenGL-7.0 -lvtksqlite-7.0 -lvtksys-7.0 -lvtktiff-7.0 -lvtkverdict-7.0 -lvtkViewsContext2D-7.0 -lvtkViewsCore-7.0 -lvtkViewsInfovis-7.0 -lvtkzlib-7.0 -lpcl_keypoints -lpcl_outofcore -lpcl_people -lpcl_recognition -lpcl_registration -lpcl_segmentation -lpcl_features -lpcl_ml -lpcl_stereo -lpcl_surface -lpcl_tracking -lpcl_filters -lpcl_sample_consensus -lpcl_visualization -lpcl_io -lOpenNI -lOpenNI2 -lpcl_search -lpcl_kdtree -lflann -lflann_cpp -lpcl_octree -lpcl_common -o build/lib.linux-aarch64-3.6/pcl/_pcl.cpython-36m-aarch64-linux-gnu.so /usr/bin/ld: cannot find -lvtkalglib-7.0 /usr/bin/ld: cannot find -lvtkChartsCore-7.0 /usr/bin/ld: cannot find -lvtkCommonColor-7.0 /usr/bin/ld: cannot find -lvtkCommonComputationalGeometry-7.0 /usr/bin/ld: cannot find -lvtkCommonCore-7.0 /usr/bin/ld: cannot find -lvtkCommonDataModel-7.0 /usr/bin/ld: cannot find -lvtkCommonExecutionModel-7.0 /usr/bin/ld: cannot find -lvtkCommonMath-7.0 /usr/bin/ld: cannot find -lvtkCommonMisc-7.0 /usr/bin/ld: cannot find -lvtkCommonSystem-7.0 /usr/bin/ld: cannot find -lvtkCommonTransforms-7.0 /usr/bin/ld: cannot find -lvtkDICOMParser-7.0 /usr/bin/ld: cannot find -lvtkDomainsChemistry-7.0 /usr/bin/ld: cannot find -lvtkexoIIc-7.0 /usr/bin/ld: cannot find -lvtkexpat-7.0 /usr/bin/ld: cannot find -lvtkFiltersAMR-7.0 /usr/bin/ld: cannot find -lvtkFiltersCore-7.0 /usr/bin/ld: cannot find -lvtkFiltersExtraction-7.0 /usr/bin/ld: cannot find -lvtkFiltersFlowPaths-7.0 /usr/bin/ld: cannot find -lvtkFiltersGeneral-7.0 /usr/bin/ld: cannot find -lvtkFiltersGeneric-7.0 /usr/bin/ld: cannot find -lvtkFiltersGeometry-7.0 /usr/bin/ld: cannot find -lvtkFiltersHybrid-7.0 /usr/bin/ld: cannot find -lvtkFiltersHyperTree-7.0 /usr/bin/ld: cannot find -lvtkFiltersImaging-7.0 /usr/bin/ld: cannot find -lvtkFiltersModeling-7.0 /usr/bin/ld: cannot find -lvtkFiltersParallel-7.0 /usr/bin/ld: cannot find -lvtkFiltersParallelImaging-7.0 /usr/bin/ld: cannot find -lvtkFiltersProgrammable-7.0 /usr/bin/ld: cannot find -lvtkFiltersSelection-7.0 /usr/bin/ld: cannot find -lvtkFiltersSMP-7.0 /usr/bin/ld: cannot find -lvtkFiltersSources-7.0 /usr/bin/ld: cannot find -lvtkFiltersStatistics-7.0 /usr/bin/ld: cannot find -lvtkFiltersTexture-7.0 /usr/bin/ld: cannot find -lvtkFiltersVerdict-7.0 /usr/bin/ld: cannot find -lvtkfreetype-7.0 /usr/bin/ld: cannot find -lvtkGeovisCore-7.0 /usr/bin/ld: cannot find -lvtkgl2ps-7.0 /usr/bin/ld: cannot find -lvtkhdf5-7.0 /usr/bin/ld: cannot find -lvtkhdf5_hl-7.0 /usr/bin/ld: cannot find -lvtkImagingColor-7.0 /usr/bin/ld: cannot find -lvtkImagingCore-7.0 /usr/bin/ld: cannot find -lvtkImagingFourier-7.0 /usr/bin/ld: cannot find -lvtkImagingGeneral-7.0 /usr/bin/ld: cannot find -lvtkImagingHybrid-7.0 /usr/bin/ld: cannot find -lvtkImagingMath-7.0 /usr/bin/ld: cannot find -lvtkImagingMorphological-7.0 /usr/bin/ld: cannot find -lvtkImagingSources-7.0 /usr/bin/ld: cannot find -lvtkImagingStatistics-7.0 /usr/bin/ld: cannot find -lvtkImagingStencil-7.0 /usr/bin/ld: cannot find -lvtkInfovisCore-7.0 /usr/bin/ld: cannot find -lvtkInfovisLayout-7.0 /usr/bin/ld: cannot find -lvtkInteractionImage-7.0 /usr/bin/ld: cannot find -lvtkInteractionStyle-7.0 /usr/bin/ld: cannot find -lvtkInteractionWidgets-7.0 /usr/bin/ld: cannot find -lvtkIOAMR-7.0 /usr/bin/ld: cannot find -lvtkIOCore-7.0 /usr/bin/ld: cannot find -lvtkIOEnSight-7.0 /usr/bin/ld: cannot find -lvtkIOExodus-7.0 /usr/bin/ld: cannot find -lvtkIOExport-7.0 /usr/bin/ld: cannot find -lvtkIOGeometry-7.0 /usr/bin/ld: cannot find -lvtkIOImage-7.0 /usr/bin/ld: cannot find -lvtkIOImport-7.0 /usr/bin/ld: cannot find -lvtkIOInfovis-7.0 /usr/bin/ld: cannot find -lvtkIOLegacy-7.0 /usr/bin/ld: cannot find -lvtkIOLSDyna-7.0 /usr/bin/ld: cannot find -lvtkIOMINC-7.0 /usr/bin/ld: cannot find -lvtkIOMovie-7.0 /usr/bin/ld: cannot find -lvtkIONetCDF-7.0 /usr/bin/ld: cannot find -lvtkIOParallel-7.0 /usr/bin/ld: cannot find -lvtkIOParallelXML-7.0 /usr/bin/ld: cannot find -lvtkIOPLY-7.0 /usr/bin/ld: cannot find -lvtkIOSQL-7.0 /usr/bin/ld: cannot find -lvtkIOVideo-7.0 /usr/bin/ld: cannot find -lvtkIOXML-7.0 /usr/bin/ld: cannot find -lvtkIOXMLParser-7.0 /usr/bin/ld: cannot find -lvtkjpeg-7.0 /usr/bin/ld: cannot find -lvtkjsoncpp-7.0 /usr/bin/ld: cannot find -lvtklibxml2-7.0 /usr/bin/ld: cannot find -lvtkmetaio-7.0 /usr/bin/ld: cannot find -lvtkNetCDF-7.0 /usr/bin/ld: cannot find -lvtkoggtheora-7.0 /usr/bin/ld: cannot find -lvtkParallelCore-7.0 /usr/bin/ld: cannot find -lvtkpng-7.0 /usr/bin/ld: cannot find -lvtkproj4-7.0 /usr/bin/ld: cannot find -lvtkRenderingAnnotation-7.0 /usr/bin/ld: cannot find -lvtkRenderingContext2D-7.0 /usr/bin/ld: cannot find -lvtkRenderingContextOpenGL-7.0 /usr/bin/ld: cannot find -lvtkRenderingCore-7.0 /usr/bin/ld: cannot find -lvtkRenderingFreeType-7.0 /usr/bin/ld: cannot find -lvtkRenderingGL2PS-7.0 /usr/bin/ld: cannot find -lvtkRenderingImage-7.0 /usr/bin/ld: cannot find -lvtkRenderingLabel-7.0 /usr/bin/ld: cannot find -lvtkRenderingLIC-7.0 /usr/bin/ld: cannot find -lvtkRenderingLOD-7.0 /usr/bin/ld: cannot find -lvtkRenderingOpenGL-7.0 /usr/bin/ld: cannot find -lvtkRenderingVolume-7.0 /usr/bin/ld: cannot find -lvtkRenderingVolumeOpenGL-7.0 /usr/bin/ld: cannot find -lvtksqlite-7.0 /usr/bin/ld: cannot find -lvtksys-7.0 /usr/bin/ld: cannot find -lvtktiff-7.0 /usr/bin/ld: cannot find -lvtkverdict-7.0 /usr/bin/ld: cannot find -lvtkViewsContext2D-7.0 /usr/bin/ld: cannot find -lvtkViewsCore-7.0 /usr/bin/ld: cannot find -lvtkViewsInfovis-7.0 /usr/bin/ld: cannot find -lvtkzlib-7.0 collect2: error: ld returned 1 exit status error: command 'aarch64-linux-gnu-g++' failed with exit status 1

  • Operating System and version: Ubuntu 18.04
  • Compiler:
  • PCL Version:
  • Cython Version: 0.25.2 also tried with the latest version

Please help!

I used the following command to install pcl: sudo apt install libpcl-dev -y

when i tried to use PCL library with C++, it works fine.

I think the problem is with VTK installation. I tried installing VTK 7.1 also 8 .2, but still the problem. Is there any way to skip VTK? I just want to access the PCL function in python.

Thanks

hannibal-paul avatar Jun 09 '19 12:06 hannibal-paul

Same issue here!

eddylan2894 avatar Nov 15 '19 07:11 eddylan2894

same here.

pyni avatar Aug 04 '20 08:08 pyni

For anyone with the same problem, this is likely caused by inconsistency between your VTK version and PCL version. In the default setting configured in python-pcl/setup.py, PCL-1.8 should have VTK-7.0, if you are havin]g another version (VTK6.3 & PCL-1.8 in my case), things might go wrong. For the fix, please refer to this issue 307 The patch, in short, directly changes the requirements by editing setup.py. Have fun!

bcccat avatar Aug 30 '20 11:08 bcccat