scat

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Repository for the SCAT code from Wasser et al

If you download this code, please take a moment to "star" the repo (click star). This will let me know that someone is interested in using the code, which will allow me to prioritize development. If no-one stars it I'll assume no-one finds it useful :).

Major revisions were released July 29, 2021.

• C++ software by M Stephens. Current maintenance by Mary Kuhner ([email protected]).

• Current version is version 3.0.2 (SCAT3)

• C++ code is in src/

• Revised manual is docs/manual.pdf; a list of changes is in this document.

##Compile

cd src/
make

##Run on example data

 cd src/
 ./SCAT3 ../docs/test.genotype.txt ../docs/test.location.txt . 2