foldcomp icon indicating copy to clipboard operation
foldcomp copied to clipboard

Database extraction failed

Open valentynbez opened this issue 2 years ago • 2 comments

Probably related to #39

I used the command from the issue to subset a database:

f"{foldcomp_binary} decompress -t 64 --db --id-list {txt_representatives} {full_af_db} {output_foldcomp}"

Now when I run check or extract --fasta commands on the output FoldComp database I receive errors:

[Error] File is not a valid fcz file
[Error] processing db entry AF-A0A1Y5IHP5-F1-model_v4 failed.
[Error] File is not a valid fcz file
[Error] processing db entry AF-A0A2D4CD26-F1-model_v4 failed.
[Error] File is not a valid fcz file
[Error] processing db entry AF-A0A356R7W7-F1-model_v4 failed.
[Error] File is not a valid fcz file
[Error] processing db entry AF-A0A7C3A4K1-F1-model_v4 failed.
[Error] File is not a valid fcz file
[Error] processing db entry AF-A0A7V3HAS1-F1-model_v4 failed.
[Error] File is not a valid fcz file
[Error] processing db entry AF-A0A502RJ01-F1-model_v4 failed.
...

Foldcomp version: dev (cloned today and built locally) OS: Red Hat 7.9

valentynbez avatar Nov 07 '23 14:11 valentynbez

Thank you for notification. I'll check this.

khb7840 avatar Nov 08 '23 04:11 khb7840

I'm sorry for making confusion. The solution of this is provided in #45.

khb7840 avatar Dec 29 '23 03:12 khb7840