Metabuli

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Older database support?

5

Hi, I was keen to try out Metabuli, and was using an R207 pre-built database but now it seems that this has been superceded by the R214 one. For the...

wwood

Profiling eukaryote contigs?

3

This looks like a great tool. I'm wondering though how well metabuli would perform classifying environmental mciroeukaryotes. Particularly, because it looks like that Prodigal is used to generate the databases,...

timghaly

Metabuli project was started targeting prokaryotes and viruses. However, since we are hearing use cases for eukaryotes and some promising performance for user side, we are planning to **optimize default...

jaebeom-kim

Metabuli produces very different results from mmseqs on longread contigs

3

Dear authors, Thank you for your work! The tool looks great, and out preliminary testing showed fantastic results for the short reads. We are interested in contig-level annotations, but in...

sgalkina

Hello, thank you for developing Metabuli, it has worked great with my test datasets! One minor suggestion is to add or have an option to add the full taxonomy in...

Serka-M

Database creation

6

I am trying to create a custom database with nt fastas, but getting a new error each time. Is there a way I could use my Kraken db to run...

VinaykiyaVridhi

Bam file as input ?

1

Hello, as I have a lot of bam files, and to avoid taking too much space and extracting the reads, I wanted to know if Metabuli could handle a command...

BenjaminGuinet

Segmentation fault when running add-to-library

2

Hi, I am trying to build my own database and running into seg fault: ``` Loading nodes file ... Done, got 2595586 nodes Loading merged file ... Done, added 78404...

eh58

Missing Header and Log File in Metabuli Output

2

**Description:** Dear Developer Team, thank you for developing Metabuli, it has worked great with my test datasets! I recently tested the Metabuli app on ONT long reads against the virus...

hackerzone85

refseq_virus/NCBI taxonomy behind current VMR.39 on more than a year

17

I would suggest rebuild metabuli viral reference database using current official viral taxonomy provided on https://ictv.global/vmr Technically, it is not difficult. Your tool processed it very smoothly. If interested, I...

igortru