locuszoom
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statgen
A Javascript/d3 embeddable plugin for interactively visualizing statistical genetic data from customizable sources.
The current plot label code is iterative on render. For a region with many labeled items, this triggers many forced refreshes, and causes the page to show a slow, ugly...
The shift+scroll to zoom feature does not work correctly in Safari. This has been traced to a safari bug. Adding a background element (or adjusting how the SVG panel area...
As the GWAS catalog gets more dense, in some regions the association plot labels (for claimed catalog traits) are unusably dense. We should evaluate ways to reduce how many labels...
Request: mouse-driven way to drag a box on a panel and select a region to zoom in on (eg d3-brush)
# Ticket #213 # Purpose Allow users to request more than one LD reference variant within the same plot. This is useful for regions with more than one potentially independent...
## Purpose Per Peter/ Ryan discussion (record of notes for followup). There are situations where a dataset might be fed to the client with pvalues outside the range allowed for...
## Goal The original version of LocusZoom allowed users to select more than one LD reference SNP for plotting, and color the plot accordingly. ([see example](https://genome.sph.umich.edu/wiki/LocusZoom_Standalone#Plotting_LD_with_additional_reference_SNPs)) This feature can be...
From @amkwong: In some cases, users may wish to include formatting in panel titles. (eg HTML italics) This is not supported by default due to the potential for XSS in...
When using fixed-width plots, the plot toolbar is allowed to flow to the edge of the container, but the plot is not. This leads to an awkward display artifact where...
Filtering operations allow controlling which elements are rendered. However, an open tooltip will remain even after its parent element has been removed by a filter + re-render operation. ## Steps...