Other interleaved FASTQ formats besides /1 and /2

Open n1mus opened this issue 5 years ago • 0 comments

https://github.com/statgen/libStatGen/blob/fae4fca874b3b78bf9b61c0eae080c15edd976a4/fastq/FastQFile.cpp#L504

Hi,

It says here that SRA supports two interleaved FASTQ formats, the /1 and /2 style, but also a newer Illumina style, like 1:Y:18:ATCACG and 2:Y:18:ATCACG.

We are using your statgen/fastQValidator, but the whole application only supports /1, /2 formats, and would love an updated version that validates newer interleaved formats!

Best wishes, Sumin

Mar 09 '20 17:03 n1mus