demuxlet
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statgen
Genetic multiplexing of barcoded single cell RNA-seq
Hi. A segmentation fault occurs during demuxlet execution. I get the same error when I remove the multi-allelic SNP. Also when using --group-list. Below is the part where the error...
Hi, Demuxlet is a awesome tool! I'm wondering can I use it to demuplex scRNA experiment mixed with mouse cell from BL6 and BALBC strain? If it works, how should...
I am processing 8 multiplexed samples through demuxlet and everything seems to run fine until the very end. Demuxlet generates the .single file but not the .best and .sing2 files....
Hi, this looks to be a wonderful tool - thank you for making this for the community! Our group is working with single-nuclear samples from solid organs and we're interested...
Hello, We have samples that will be genotyped on different arrays, will this be a problem when demultiplexing due to less overlap of shared snps? Thank you, Carolyn
Does demuxlet output the number of SNPs used to assign each cell to a donor? Is this the **N.SNP** column in the .best output file? Because often this number is...
Hi! I had run demuxlet successfully before, but am now encountering an error: NOTICE [2020/10/19 20:10:39] - Processing 7470000 markers... NOTICE [2020/10/19 20:10:39] - Processing 7480000 markers... NOTICE [2020/10/19 20:10:39]...
It would be convenient for conda users if demuxlet was added to [bioconda](https://bioconda.github.io/). In order to facilitate writing a conda recipe, would you be able to tag a release on...
I need to use a demuxlet to demultiplex the data generated by BD Rhapsody platform. I checked the --tag-umi and --tag-group formats of the data generated by Bhapsody, but I...
I am trying to install demuxlet on my system running Ubuntu 18.04. As instructed I first installed htslib-develop into a directory on my desktop, then downloaded demuxlet into the htslib-develop...
