shinystan
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stan-dev
unable to install shinystan and rstan
> install.packages("shinystan")
Installing package into ‘/home/cdsw/R’
(as ‘lib’ is unspecified)
also installing the dependency ‘rstan’
trying URL 'https://cran.rstudio.com/src/contrib/rstan_2.19.3.tar.gz'
Content type 'application/x-gzip' length 922337 bytes (900 KB)
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downloaded 900 KB
trying URL 'https://cran.rstudio.com/src/contrib/shinystan_2.5.0.tar.gz'
Content type 'application/x-gzip' length 2400413 bytes (2.3 MB)
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downloaded 2.3 MB
g++ -std=gnu++14 -I"/usr/local/lib/R/include" -DNDEBUG -I"../inst/include" -I"." -I"/home/cdsw/R/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -I"/home/cdsw/R/Rcpp/include" -I"/home/cdsw/R/RcppEigen/include" -I"/home/cdsw/R/BH/include" -I"/home/cdsw/R/StanHeaders/include" -I/usr/local/include -fpic -g -O2 -c chains.cpp -o chains.o
g++ -std=gnu++14 -I"/usr/local/lib/R/include" -DNDEBUG -I"../inst/include" -I"." -I"/home/cdsw/R/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -I"/home/cdsw/R/Rcpp/include" -I"/home/cdsw/R/RcppEigen/include" -I"/home/cdsw/R/BH/include" -I"/home/cdsw/R/StanHeaders/include" -I/usr/local/include -fpic -g -O2 -c pointer-tools.cpp -o pointer-tools.o
g++ -std=gnu++14 -I"/usr/local/lib/R/include" -DNDEBUG -I"../inst/include" -I"." -I"/home/cdsw/R/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -I"/home/cdsw/R/Rcpp/include" -I"/home/cdsw/R/RcppEigen/include" -I"/home/cdsw/R/BH/include" -I"/home/cdsw/R/StanHeaders/include" -I/usr/local/include -fpic -g -O2 -c init.cpp -o init.o
g++ -std=gnu++14 -I"/usr/local/lib/R/include" -DNDEBUG -I"../inst/include" -I"." -I"/home/cdsw/R/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -I"/home/cdsw/R/Rcpp/include" -I"/home/cdsw/R/RcppEigen/include" -I"/home/cdsw/R/BH/include" -I"/home/cdsw/R/StanHeaders/include" -I/usr/local/include -fpic -g -O2 -c stanc.cpp -o stanc.o
/usr/local/lib/R/etc/Makeconf:168: recipe for target 'stanc.o' failed
Warning in install.packages :
installation of package ‘rstan’ had non-zero exit status
Warning in install.packages :
installation of package ‘shinystan’ had non-zero exit status
The downloaded source packages are in
‘/tmp/RtmpHRIN0I/downloaded_packages’
> sessionInfo()
R version 3.5.1 (--)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 16.04.6 LTS
Matrix products: default
BLAS/LAPACK: /usr/lib/libopenblasp-r0.2.18.so
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] bayesplot_1.7.1 EnvStats_2.3.1 gdata_2.18.0 lubridate_1.7.4 data.table_1.12.2
loaded via a namespace (and not attached):
[1] Rcpp_1.0.1 git2r_0.26.1 pillar_1.4.2 compiler_3.5.1 plyr_1.8.4 remotes_2.1.0
[7] prettyunits_1.0.2 tools_3.5.1 packrat_0.5.0 pkgload_1.0.2 digest_0.6.19 pkgbuild_1.0.3
[13] memoise_1.1.0 tibble_2.1.3 gtable_0.3.0 pkgconfig_2.0.2 rlang_0.4.0 cli_1.1.0
[19] rstudioapi_0.10 curl_3.3 parallel_3.5.1 withr_2.1.2 dplyr_0.8.2 stringr_1.4.0
[25] fs_1.3.1 desc_1.2.0 gtools_3.8.2 devtools_2.0.2 rprojroot_1.3-2 grid_3.5.1
[31] tidyselect_0.2.5 glue_1.3.1 R6_2.4.0 processx_3.3.1 sessioninfo_1.1.1 ggplot2_3.2.0
[37] purrr_0.3.2 callr_3.2.0 magrittr_1.5 usethis_1.5.0 backports_1.1.4 ps_1.3.0
[43] scales_1.0.0 ggridges_0.5.2 assertthat_0.2.1 colorspace_1.4-1 stringi_1.4.3 lazyeval_0.2.2
[49] munsell_0.5.0 crayon_1.3.4
Hello,
It seems like the problem occurs when installing rstan. rstan depends on StanHeaders (> 2.18.1) maybe you need to install this first. Could you try that?
Best, Duco
