barnaba
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srnas
Analyse Nucleic Acids Structure and Simulations with baRNAba
### Motivation I got stuck for a little while on a problem with Barnaba while processing a dataset using multiprocessing. Some files caused the program to exit because no valid...
Could you please instruct me how to plot svg files from out files that generated from barnaba ANNOTATE command ?
What would be the best way of getting the backbone interactions from 5' to 3'? Thanks!
Thank you for this very useful library. Just would like a bit more detail on the output of `bb.annotate()` and how it matches to the original PDB's residue and chain...
Hi, I want to use Barnaba to compare kink-turns between them and also with some new other patterns. I would like to obtain first eRMSD values between two kink-turns. So...
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Hi Sandro, I'm having a problem installing barnaba in python3.9: Installation initially seems fine: ---- pip install barnaba Requirement already satisfied: barnaba in /home/sabine/.local/lib/python3.9/site-packages (0.1.7) Requirement already satisfied: numpy in...
Hi, I am using Barnaba to extract backbone torsion angles PDB 5YTT (chain B) (Image and PDB file attached here). It has a missing residue, however, barnaba give values for...
Here i am using below code for calculation of ermsd of RNA system by using gromacs trajectry file. And i got an error like Error... Can anyone help me regarding...
Is there a way to stop the rna on the .svg image collapsing on itself during minimisation (on the 2d image).
