scAI

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Hi, I am currently trying to run scAI. There are no runtime errors (or warnings which would indicate what is happening) but the learned matrix H (from [email protected]) and W...

wmorgans

When I run this code: gene.mean

yuxuanChen777

Can't run identifyClusters

4

I've been trying to run scAI in an HPC environment. Here's the code: ``` LIB_PATH = "./R_libs/R-4.0.0/" library(Seurat) library(ggplot2) library(scAI, lib.loc = LIB_PATH) library(swne, lib.loc = LIB_PATH) load("./data/data_simulation.rda") X

f6v

lmHeatmap: node stack overflow

5

I'm trying to run the example with the simulated data, and I've got a failure on the following line: ``` lmHeatmap(scAI_outs, color.by = "labels") ``` > Error in is.leaf(dend) :...

f6v

Select highly variable loci for ATAC-seq

1

``` object

PeterZZQ

kant

Thank you for your great work! I wonder if there is any examples in using the inferRegulations() function. I noticed that the A549 dataset was used to evaluated the reconstructed...

Ying-Lab

Hi developers, Thanks for such an efficient tool for integrating multi-omics data. Could scAI handle more than two modalities? I have noticed that run_scAI only has two parameters (hvf.use) for...

Arielode