MetaCHIP

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No input genome detected, program exited! using costumized grouping

1

I tried MetaCHIP with five samples. I have the bins in a single folder BRbins, and customized grouping like this RC_V,RC_V.bin.7 RC_V,RC_V.bin.8 RC_V,RC_V.bin.9 RC_VI,RC_VI.bin.10 RC_VI,RC_VI.bin.11 ... ... The bins are...

jesusbvf

Find HGT between genes of different genomes

6

I made multifasta files of genes of interest of several genomes and used them as input files in a directory called genomes as following singularity exec /apps/singularity-images/metachip_1.10.2.sif MetaCHIP PI -p...

ga23981

Error in PI step: Invalid index

1

Hi Few days ago, I downloaded the MetaCHIP(V1.10.9) and succeeded in testing the example data. But when I run MetaCHIP with the data myself, the error occur below: command: MetaCHIP...

linshutian02

Command line argument error: Argument "subject". File is not accessible

2

Hi Weizhi, Do you have any idea about the below error? **Command lines** MetaCHIP PI -p X_string -r p -t 20 -i ${MAG_oms_dir} -x fasta -taxon ${MAG_GTDB_oms} MetaCHIP BP -p...

B-1991-ing

About the interpretation of the results

2

Hello! I want to ask a question about the biological interpretation of horizontal gene transfer. I used MetaCHIP to get the genes that had a horizontal transfer between MAGs. The...

maocheng2020

conda install -c bioconda metachip

2

Dear MetaCHIP developpers, Thanks for your efforts in this amazing tool. Is the [conda environement](https://anaconda.org/bioconda/metachip) maintained ? Would you recommend installing MetaCHIP through it? It is running still yesterday: >...

fconstancias

Hi，Mr Song I work around my assembles and cutomized grouping text with your pipeline. Although everything went well at the begining, the error indicated no files detected when creating flankregion...

aslangabriel

Issue when parsing the Ranger-DTL2 output, no circos created

1

Hi, I am using MetaCHIP 1.10.9 and there's an issue at the BP step: ``` [2022-07-04 10:53:41] Filtered blastn results detected, filtration step skipped. [2022-07-04 10:53:41] Detect HGT among species:...

polinanvkv

Hey @songweizhi! Thank you for such an interesting paper and software! I wanted to ask if there is a recommendation on use of tools such as RefineM, GUNC or MAGpurify...

Jigyasa3

Hey, thanks for developing and maintaining metaCHIP. I want to use it to detect HGT, but I have some problems in executing MetaCHIP BP. Here is the error feedback I...

liyaron