sokrypton
Issues using forked alphafold for modifed colabfold
Expected Behavior
trying to test run a colabfold on a modified alphafold repo, should run batch.py on a test fasta file
Current Behavior
alphafold.common is not recognized, modulenotimported error
Steps to Reproduce (for bugs)
follow the steps on contribute.md for local changes
Context
Have tried updating the python path, importing manually with importlib
Your Environment
running on linux machine, a100, not docker compatible
have also tried working directly in a colab notebook but Bio.SCOP not found when running import colabfold.batch
Are you using our alphafold fork: https://github.com/steineggerlab/alphafold
If not please replay your changes onto our fork. ColabFold is not meant to be run with DeepMind's AF2.
yeah just following instructions here, seems to be your af fork: https://github.com/sokrypton/ColabFold/blob/main/Contributing.md