ColabFold
ColabFold copied to clipboard
Folding de novo protein complex is still accessing the server. How can I bypass server?
I am running the following colabfold command:
colabfold_batch
--num-recycle 3
--msa-mode single_sequence
--amber
--use-gpu-relax
--num-relax 1
--num-model 2
--model-order 1,2
--templates
--custom-template-path $newdir
--overwrite-existing-results
$filename.fasta $af2_output
I do not expect to use any MSAs other than the single sequence and the only template required is the .cif file template I am providing. However, it is still connecting to the server. Since I am running a hundreds of structures, I am running into rate limits. How can I bypass the server?