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Folding de novo protein complex is still accessing the server. How can I bypass server?

Open johnny-rodriguez opened this issue 1 year ago • 0 comments

I am running the following colabfold command: colabfold_batch
--num-recycle 3
--msa-mode single_sequence
--amber
--use-gpu-relax
--num-relax 1
--num-model 2
--model-order 1,2
--templates
--custom-template-path $newdir
--overwrite-existing-results
$filename.fasta $af2_output

I do not expect to use any MSAs other than the single sequence and the only template required is the .cif file template I am providing. However, it is still connecting to the server. Since I am running a hundreds of structures, I am running into rate limits. How can I bypass the server?

johnny-rodriguez avatar Apr 04 '24 13:04 johnny-rodriguez