ColabFold MSA server error in AlphaFold2.ipynb

[bzhousd]

Expected Behavior

ColabFold MSA server returns results

Current Behavior

raise Exception(f'MMseqs2 API is giving errors. Please confirm your input is a valid protein sequence. If error persists, please try again an hour later.')

Steps to Reproduce (for bugs)

go to https://colab.research.google.com/github/sokrypton/ColabFold/blob/main/AlphaFold2.ipynb keep all default values except for 'query_sequence', which is "AAAAAAAAAAAAAAAAAALLAAA"

ColabFold Output (for bugs)

2023-08-11 20:45:03,462 Running on GPU 2023-08-11 20:45:03,466 Found 4 citations for tools or databases 2023-08-11 20:45:03,466 Query 1/1: test_9f888_1 (length 69) PENDING: 0%| | 0/150 [elapsed: 00:00 remaining: ?]2023-08-11 20:45:03,876 Sleeping for 6s. Reason: PENDING ERROR: 0%| | 0/150 [elapsed: 00:06 remaining: ?]2023-08-11 20:45:10,244 Could not get MSA/templates for test_9f888_1: MMseqs2 API is giving errors. Please confirm your input is a valid protein sequence. If error persists, please try again an hour later. Traceback (most recent call last): File "/content/colabfold/batch.py", line 1377, in run = get_msa_and_templates(jobname, query_sequence, a3m_lines, result_dir, msa_mode, use_templates, File "/content/colabfold/batch.py", line 817, in get_msa_and_templates a3m_lines = run_mmseqs2( File "/content/colabfold/colabfold.py", line 231, in run_mmseqs2 raise Exception(f'MMseqs2 API is giving errors. Please confirm your input is a valid protein sequence. If error persists, please try again an hour later.') Exception: MMseqs2 API is giving errors. Please confirm your input is a valid protein sequence. If error persists, please try again an hour later. 2023-08-11 20:45:10,245 Done

Context

Your Environment

N/A

Thanks

[milot-mirdita]

Should be back up, might take up to an hour again to update DNS.