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Extract the Distogram and Other Detailed Outputs using ColabFold

Open kazemf78 opened this issue 3 years ago • 0 comments

Hi, I wanted to use ColabFold to get the single and pair representation of several proteins along with the distogram. The former can be saved with including save_single_representation=True and save_pair_representation=True in the parameters of the run function in the AlphaFold2_batch.ipynb notebook (similar to what you mentioned previously in this issue, and by the way, I didn't understand what file or notebook exactly you meant when mentioning colabfold_batch executable or script in that issue!). My question now is that how can I also get the distogram output? For example, the prediction_result variable contains several other detailed outputs along with the distogram but seemingly it's not currently exposed to use in AlphaFold2_batch.ipynb notebook results (or in any outputs of the functions implemented in colabfold/batch.py file). Best,

kazemf78 avatar Sep 18 '22 12:09 kazemf78