local MSAs different to ipynb-MSAs

[dominik-handler]

Expected Behavior

MSAs generated locally and on the ipynb should be identical

Current Behavior

local MSA coverage

ipynb MSA coverage

Steps to Reproduce (for bugs)

I am running the MSA prediction as indicated in the readme without any options. I use the latest commit of mmseqs2 and the database hosted here https://colabfold.mmseqs.com/.

Are there any special settings that need to be applied to replicate the default colabfold behavior?

Thank you, Dominik