uniclust-pipeline
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soedinglab
Hi, First apologies if I am posting this in the wrong place. May I know what are the differences between "UniRef30_2022_02_a3m.ffdata", "UniRef30_2022_02_hhm.ffdata", and "UniRef30_2022_02_cs219.ffdata"? Which file should I be using...
Greetings, Is there a mirror for the database downloads? I'm attempting to download the uniclust30 for hhsuite using the link from the uniclust.mmseqs.com site, but the download is exceedingly slow...
after giving all paths and running ./run_hhdatabase.sh i get error Input /uniport_db does not exist. i have no idea what it means
Hello, I'm trying to use this pipeline with https://mmseqs.com/latest/mmseqs-linux-avx2.tar.gz . Not working, I got a lot of errors regrding unknown mmseqs2 arguments. Maybe authors should either provide the release of...
Hi Söding lab and thank you for maintaining the UniClust database! I am trying to understand the uniclust##_yyyy_mm_cluster_mapping.tsv downloaded from http://gwdu111.gwdg.de/~compbiol/uniclust/2022_02/, in which the first 5 lines are: ``` 32...
Anyone tried building their own databases for hhblits ? I mean that from a protein fasta file to hhblits database. I am using this pipeline ButI am very sorry that...
I am wondering if there are any recent releases of Uniboost. It seems that the last time it was 2017. Is there a reason it is not updated anymore? Thanks!
Hi! While trying to run the pipeline I found certain flags I had either to change manually in the code or not recognized altogether. One issue is related to a...
Is it possible to get the intermediate results of cascaded clustering? Thank you!
Would be it be possible to provide some (or all) of the species specific Proteomes that are available through the hhpred web interface? For starters, I might suggest human, yeast,...
