soedinglab
max-seq-len default value
Is --max-seq-len default value reported with mmseqs2
For everywhere it is reported to be 65535, but it seems that in the source code (i.e. here https://github.com/soedinglab/MMseqs2/blob/7f5c0003a9135add5a2b6f14ab822e527b3df547/src/workflow/Cluster.cpp#L58 ) it is set to 10000 and it actually matches with the mmseq align results I see - they are truncated on first 10000 bases
Expected Behavior
Current Behavior
Steps to Reproduce (for bugs)
Please make sure to execute the reproduction steps with newly recreated and empty tmp folders.
MMseqs Output (for bugs)
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Context
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Your Environment
Include as many relevant details about the environment you experienced the bug in.
- Git commit used (The string after "MMseqs Version:" when you execute MMseqs without any parameters):
- Which MMseqs version was used (Statically-compiled, self-compiled, Homebrew, etc.):
- For self-compiled and Homebrew: Compiler and Cmake versions used and their invocation:
- Server specifications (especially CPU support for AVX2/SSE and amount of system memory):
- Operating system and version:
