MMseqs2
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--majority flag in easy-taxonomy workflow
I'm running the command: mmseqs easy-taxonomy taxdb output tmp -e 1e-5 -s 6 --blacklist --tax-lineage 1 --majority 0.75
However many of the taxonomy results have <0.75 agreement (fewer than 75% of genes with taxonomy agree with the assigned taxon)
I've attached the output and log file