scHPF

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Adding and integrating a `load_h5ad()` function to load `.h5ad` Anndata matrices.

ricomnl

Hi, I am wondering how we can compute or extract the log-likelihood at a certain number of factors in order to check for convergence and optimal selection of number of...

ewouddt

Hey, I have been reading your paper for a while and it is quite useful in my research. I would like to test this method but the setup is getting...

hmf0103

Hi, I've been exploring my datasets with scHPF and it looks very promising. Thanks a lot for developing this! One thing I'm interested in, however, is reconstructing the expression matrix...

iUser1234

Preprocessing of scHPF

2

Thanks for the useful tool, I'm trying to use it to find the correlated functional modules which distinguish the cell clusters. As for the "ranked_genes" outputted from scHPF, I wonder...

AstreChen

Posterior predictive checks?

1

I've been using this package for a class project. It's great! In the paper you discuss running posterior predictive checks with scHPF, but I didn't find anything in the documentation...

mjbroerman

How to deal with batch effects?

2

Thank you for the great contribution! I'm currently trying scHPF on a few datasets and found that it was easy to apply. I'd like to know how to properly deal...

jenzopr

Pytorch implementation

4

Thanks for your great contribution. I really enjoyed reading the paper. I hope you do not mind me asking, but are there any plans for implementing the code in Pytorch?...

rfarouni

Failing pytest at installation

2

Hi, I followed the instructions on the ReadMe for installation, outlined here as well. ``` git clone https://github.com/simslab/scHPF.git cd scHPF pip install . conda install pytest ``` However when checking...

reetm09