VirSorter

VirSorter copied to clipboard

I have warnings in the error file that I do not understand.

2

I have the following errors in the "err" file: [mclIO] writing ....................................... [mclIO] wrote native interchange 10469x10469 matrix with 10936 entries to stream [mclIO] wrote 10469 tab entries to stream...

ewars

Missing output data

1

I installed and called virsort according to the steps, but the number of output results is far from the input data, and it is still wrong after using the --virome...

xiaozhangzhang123

Step 1 failed: VIRSorter_prots.fasta and VIRSorter_nett_filtered.fasta were not found

17

I was wondering if I could get some assistance with this. What does it mean? Am I writing the command incorrectly? Is there something additional that I need to download?...

asttra

Addressing a common problem with BioPerl installation: "Can't locate Bio/Seq.pm in @INC"

6

Hi Simon, I just wanted to share my quick solution to what appears to be a common issue with BioPerl installation, at least based on: #63 , #71 . This...

deanna-kim

Prophage regions

1

Hello, I was wondering how exactly VirSorter defines a prophage regions and if there is a way to get the coordinates of the prophage regions identified? Thanks, Niamh

niamhlacy

Where to download files needed for --data-dir parameter

1

I just downloaded virsorter through setting up a conda environment. However I cannot find anything in the documentation stating where to get the files needed to pass to the `--data-dir`...

flannsmith

linear & circular Labeling chaos In the resulting Genebank file

1

Hi Simroux: I really appreciated this pipeline you contributed to the viral study. This is a question. In the predictions, the comments in the genebank file were inconsistent with the...

fangzhou233

Different number of Viral contig

1

Hi Simroux: Firstly I really appreciated this pipeline you contributed to the viral study. In my case, there are two questions. I have downloaded 3745 viral Refseq contigs from NCBI...

zhanwen-cheng

Perl: symbol lookup error, Perl_xs_apiversion_bootcheck

1

Hi, I installed virsorter on a CentOS system through conda, and run it, then I got an error: Perl: symbol lookup error: /rds/general/user/lh1019/home/perl5/lib/perl5/x86_64-linux-thread-multi/auto/List/Util/Util.so: undefined symbol: Perl_xs_apiversion_bootcheck I don't know how...

JiqiuWu

Detection of eukaryotic viruses?

2

Is there any information on the performance/ability of VirSorter to detect signatures of eukaryotic viruses in environmental datasets? I've been playing a bit with the software but the output appears...

rprops