Simon Graham
Simon Graham
Hi. I am not sure why you are asking about Mask-RCNN, as this is the HoVer-Net repo, but I can answer your question anyway. In fact Mask-RCNN is purposely built...
Please also take a look at issue #40
Hi - can you please dump the entire error that you get in your terminal?
Hi @essential2189 , So you are processing 24,000 image tiles and 8 / 24,000 are not showing results? It is hard to give an exact diagnosis as to why this...
Hi @curlup - thanks for flagging this. Did it fix it if you changed [this line](https://github.com/TissueImageAnalytics/cerberus/blob/master/environment.yml#L31) to 1.2.0? Happy to consider a PR if you wanted to test it.
I believe it should be: ``` nuclei_dict = { 0: 'nolabel', 1: 'neutrophil', 2: 'epithelial', 3: 'lymphocyte', 4: 'plasma', 5: 'eosinophil', 6: 'connective' } tissue_dict = { 0: 'background', 1:...
Thank you for your comment. At this stage, we don't have plans to release the training code, but hope the inference code with pretrained weights is useful.
Yes, you will be able to fine-tune if you take the model definition along with the pretrained weights from this repo. However, we don't provide the functionality to do that...
We start with a patch double the size of the input. 1) 540 x 540 patch 2) augmentation 3) central crop: input size = 270x270 4) output size of network...
Hi @YoniSchirris - thanks for this! You should be able to make a PR - did you fork the repo? Simon