Hi, i am 9595 from india. i have a problem while compiling TERefiner_1

[9495hi]

cd TERefiner && make && cd .. = after this command fatal error api/BamReader.h: No such file or directory compilation terminated is generating.

g++ -O3 -Wall -static -I../bamtools/build/src/api/include -I../bamtools/build/src/include -L -Wl,-rpath, -c bam_parse.cpp In file included from bam_parse.cpp:1:0: bam_parse.h:4:27: fatal error: api/BamReader.h: No such file or directory compilation terminated. Makefile:19: recipe for target 'bam_parse.o' failed make: *** [bam_parse.o] Error 1

I even tried multiple links from bamtools repository and build folder to REPdenovo/bamtools-master, and the file is never found. kindly, solve as i have to finish my project within 10 days.

[Milad021]

I found a workaround for this compilation issue : https://github.com/Reedwarbler/REPdenovo/issues/11#issuecomment-393540162

[9495hi]

Its not working in my case