GAPPadder
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simoncchu
GAPPadder is tool for closing gaps on draft genomes with short sequencing data
I ran the Preprocess and Collect steps according the ReadMe with no apparent errors. However, it seems like some expected output was not produced because when I run the Assembly...
I am trying to make TERefiner using the following command: ``` cd TERefiner && make && cd .. ``` but i get: ``` ./bam_parse.h:4:10: fatal error: 'api/BamReader.h' file not found...
Hello, i was running the collect part of the pipeline and i get this error: "Traceback (most recent call last): File "./main.py", line 283, in main_func(scommand,sfconfig) File "./main.py", line 257,...
Hi, I am trying to run your GAPPadder software. However, I get an error that we can not figure out. Could you please give some advice? Do we need a...
I get several errors during the complete run (-c All) as well as using -c Collect, as you can see below. Can you please help to fix it, or to...
Hi, I assembled my genome using MITObim. I haven't managed to run GAPPadder due to IndexError: string index out of range after trying to 'Preprocess the draft genome to get...
Hi back I am opening a new issue, as gappadder isn't working yet with me: I have recompile TERefiner_1 and ContigsMerger (see previous closed issue). I am testing the program...
Hi @simoncchu I was able to run the Preprocess and Collect steps, but during assembly this is the error message that I get: ``` First round assembly and merger... **...
#python ./main.py -c Preprocess -g configuration_phage.json File "./main.py", line 16 print 'Usage: python {0} -c Options -g configure_file\n'.format(sys.argv[0]), ^
