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tw launch --params-file should be merged with pipeline params-file

Open benbfly opened this issue 2 years ago • 0 comments

When I associate a --params-file with a pipeline, it gets stored as paramsText. Then if I launch that pipeline with a --params-file it seems to overwrite the paramsText, when what I would expect is it to merge the variables (overwriting when necessary).

At least that's the behavior I expect based on the Nextflow paradigm of config/params precedence rules.

I am using YAML params. I'm not sure if the same happens with JSON params

benbfly avatar Nov 23 '23 11:11 benbfly