seq

seq copied to clipboard

Example: Executing ```python # This raises error with open('sample.txt') as f: data = f.read() ``` raises an error saying `error: missing argument 'sz'`. However, when the number of bytes to...

Prakash2403

```python $ ../seq/seq-0.10.3/bin/seqc run test_backslach.seq ABC DEFGHI JKL ABC DEFGHI JKL $ ../seq/seq-0.11.0/bin/seqc run test_backslach.seq test_backslach.seq:7:15: error: syntax error, unexpected '\', expecting , , . $ cat test_backslach.seq s =...

ghuls

Build an execution program not depending on the runtime libraries

1

Could I use `seqc build` to build an execution program not depending on the runtime libraries, such as libomp.so libseqrt.so and libseq.so?

liqg

I encounter several errors in Arch Linux. Arch Linux always used the latest version of LLVM, there were several API changes, such as #253 . Do you have plans to...

tcztzy

llvm::sys::fs::F_None is removed in recent releases

1

https://github.com/seq-lang/seq/blob/54451c3267b140f7e2073c05d3cf8080de688a8f/compiler/sir/llvm/llvisitor.cpp#L421 https://reviews.llvm.org/D101506 Maybe we can use `llvm::sys::fs::OF_None` instead?

tcztzy

Any potential clash with biopython

2

Hi, I am a little concerned with the import statement "from bio import *" as it is too similar to that of using Biopython - "from Bio import *"

mauriceling

Fails to build on Apple M1

7

I used the following on Apple M1 MacBook Pro: ```console $ conda create -n seq llvmdev=12 cmake $ conda activate seq $ cmake .. -DCMAKE_BUILD_TYPE=Release \ -DLLVM_DIR=$(llvm-config --cmakedir) \ -DCMAKE_C_COMPILER=clang...

certik

Multiple definitions of functions during executable generation

6

Hi, I'm following the "Calling Seq from C/C++" example using the latest seq-lang release (v0.11.0) and generate a shared object, but when linking to the executable I get the following...

samhorsfield96

conda packaging

3

Hi, I'm thinking to make it available through conda. see here https://github.com/bioconda/bioconda-recipes/pull/29660 I would need to know if deps.sh statically compiles dependencies in. Could you let me know?

Juke34

Standard library TODO

12

Hi Jordan, let's start with the string library: https://docs.python.org/3/library/stdtypes.html#textseq You can avoid string.format part for now. Some functions (like `str.split`) are implemented in multiple places: for example, split on a...

inumanag