mutserve
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seppinho
mtDNA Variant Caller
Hi, The documentation link https://mitoverse.readthedocs.io/mutserve/mutserve/ gives 404 error. Could you please provide an updated link? Thanks!
Hi! I am not sure why I haven't been able to find references for using mutserve on mouse data.
Bumps [htsjdk](https://github.com/samtools/htsjdk) from 2.23.0 to 3.0.1. Release notes Sourced from htsjdk's releases. 3.0.1 Fix for a long standing vulnerability around temporary directory creation which could expose data to malicious users...
![dependabot[bot] avatar](https://avatars.githubusercontent.com/in/29110?v=4 "dependabot[bot] avatar"){kind=avatar}
We focused on identifying heteroplasmy levels in nanopore sequencing data using Mutserve2 with default settings. We simulated various levels of heteroplasmy for one mitochondrial variant using bioinformatics. What we observed...
How it could be possible to optimize mutserve to analyse Nanopore reads? (long-reads) thanks
I am getting the following error message when trying to run the variant caller tool. I saw someone had a similar error in another thread, which was solved by removing...
Hello, I am trying to run mutserve using .cram files as from documentation seems it supports it: ``` Usage: mutserve call [--baq] [--deletions] [--help] [--insertions] [--no-ansi] [--no-freq] [--version] [--write-fasta] [--write-raw]...
**INDEL ERROR**: A Exception raise up when calling variant from some bam, tab txt produce success, but a blank vcf result. when move out calling deletions and insertions, vcf produce...
genepi/io/table/reader/AbstractTableReader.class  when there are indels in *chrM.vcf.txt, 14766.1 cannot be change to Interger. I will get error below:  How about do some change? 
https://www.thermofisher.com/order/catalog/product/A30938 Overlapping reads mapped to larger genome than rCRS, needs remapping (basically modulo)
