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Ray -- Parallel genome assemblies for parallel DNA sequencing
Hello, I am having trouble running ray. I am not sure if this is a simple error on my side or something related to Openmpi. 
Dear all, is there a way to find what is the best kmer for a given assembly (like SPAdes)? I think it would be a nice feature to add (even...
I keep getting this error while running Ray Rank 30: assembler memory usage: 342492 KiB Critical exception: The length of the requested memory exceeds the CHUNK_SIZE: 4718592 > 4194304 Ray:...
Sometimes, Ray Meta seems stuck. The log output looks as follows: ``` ... Rank 7 computing contig abundances [63043/130531] [118/118] Rank 77 computing contig abundances [62815/130236] [1/118] Rank 77 computing...
I have successfully compiled and run Ray, but have no clue how to run Ray Meta? What is the difference in the command line to run Ray Meta vs. Ray...
Looking at the `OutputNumbers.txt` file, it looks like I get the same numbers for scaffolds and contigs: ``` Contigs >= 100 nt Number: 455357 Total length: 76317200 Average: 167 N50:...
We have 2x7.7 Gb paired end ~100bp reads. With kmer=45 option RAY assembled it for ~2h10m on 16 core 32 Gb node. Suspecting it's too fast we checked and assembled...
I've a qsub-job with 2*6 metagenome-paired-end-files with these command: `mpiexec -n 156 Ray -k 31 -p MG1_R1.fastq MG1_R2.fastq -p MG2_R1.fastq MG2_R2.fastq -p MG3_R1.fastq MG3_R2.fastq -p MG4_R1.fastq MG4_R2.fastq -p MG5_R1.fastq MG5_R2.fastq...
Hi, I am currently testing Ray with a dataset we already successfully assembled with SPAdes. Surprinsingly, although the output folder we set when launching Ray ends up containing lots of...
