squidpy
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ConnectionError: HTTPSConnectionPool(host='omnipathdb.org', port=443): Read timed out.
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Dear Author:
Thank you for your great toolkit for spatial omics.
When I run the code, I met this question. Could you please tell me how to figure out it?
sq.gr.ligrec( adata, n_perms=100, cluster_key="celltype_mapped_refined", ) sq.pl.ligrec( adata, cluster_key="celltype_mapped_refined", source_groups="Lateral plate mesoderm", target_groups=["Intermediate mesoderm", "Allantois"], means_range=(0.3, np.inf), alpha=1e-4, swap_axes=True, )
ConnectionError: HTTPSConnectionPool(host='omnipathdb.org', port=443): Read timed out.
By the way, I can't fetch the test data sometimes.
adata = sq.datasets.seqfish()