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Image registration

Open hspitzer opened this issue 4 years ago • 0 comments

Type of the feature

  • [x] New function in sqduipy.im?
  • [ ] New function in squidpy.gr?
  • [x] New function in squidpy.pl?
  • [ ] Change an existing functionality, such as default behavior?
  • [ ] Other?

Description

We would like to provide basic image registration functionalities! This can be either feature-based or intensity-based affine registration of images.

possible api would be: sq.im.register(img_source, img_target) -> img_registered

  • transform all image layers to fit on img_source
  • save transformation as attribute in the image

plotting functions that need to be adapted:

  • use saved transformation to correctly visualise obs coordinates.
  • enable visualisation of multiple image layers in napari (using concatenated image object with all registered images as layers)

hspitzer avatar Mar 23 '21 15:03 hspitzer