squidpy
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Image registration
Type of the feature
- [x] New function in
sqduipy.im? - [ ] New function in
squidpy.gr? - [x] New function in
squidpy.pl? - [ ] Change an existing functionality, such as default behavior?
- [ ] Other?
Description
We would like to provide basic image registration functionalities! This can be either feature-based or intensity-based affine registration of images.
possible api would be:
sq.im.register(img_source, img_target) -> img_registered
- transform all image layers to fit on img_source
- save transformation as attribute in the image
plotting functions that need to be adapted:
- use saved transformation to correctly visualise obs coordinates.
- enable visualisation of multiple image layers in napari (using concatenated image object with all registered images as layers)