spatialdata-plot
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scverse
Static plotting for spatialdata
To get a feeling for when rendering with `datashader` is faster than `matplotlib`, we prepared a notebook contrasting the two: https://github.com/scverse/spatialdata-notebooks/blob/main/notebooks/examples/speed_up_illustration.ipynb However, in doing so we found that rendering points...
I got an error when trying to plot a categorical column present in a point object using the datashader backend. I noticed that no tests were covering plotting points columns,...
> Thanks for the update. One note: I think that we should throw a warning when the color can't be found automatically, as otherwise the user would silently see a...
Sth I encountered while working on #337: when using datashader, transformations of points and shapes need to be applied before rendering. I think the flipping of the y-axis leads to...
During the hackathon in Basel we have brainstormed on the specification that would allow for viewing data across the spatialdata visualization ecosystem with one viewconfig. This issue describes the current...
Currently in napari we do not support the visualization of 3D data. While full 3D support is too much of a task for the near future, we could improve better...
Hi developer. Thanks alot for the useful tools and sorry for keep bothering. I need a 3D visualiza on my xenium dataset. Now I can correctly load my xenium data...
Hi! I encountered an issue when using the render_shapes() function to visualize my Xenium data. My code works fine when selecting two values in the groups argument, but when I...
I am trying to render an image layer using spatialdata plot: ```python from spatialdata import read_zarr import spatialdata_plot import matplotlib.pyplot as plt sdata = read_zarr("test_sdata.zarr") fig, axs = plt.subplots(1, 2,...
