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CosMX reader with stitching

Open quentinblampey opened this issue 1 year ago • 0 comments

Adding stitching to the CosMX reader. It's also possible to load one FOV only (if desired), and reading the proteins has also been added.

This is still a very early version of the reader, and it lacks the things below, but I made the PR so that we can start a discussion.

  • [ ] Update CHANGELOG
  • [ ] Add all constants in CosmxKeys
  • [ ] Add labels to the SpatialData object
  • [ ] Update the docstrings (this comes from Sopa, and has not been updated yet)
  • [ ] Adding some tests?

quentinblampey avatar Apr 17 '24 11:04 quentinblampey