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Questions about using sc.read_csv
Hi, all
As new to scanpy, I met strange things when using sc.read_csv, the obs are genes and the var are cells
adata = sc.read_csv(x)
data
# AnnData object with n_obs × n_vars = 41861 × 4270
The original csv is like this:
bcETOJ bcHGXP bcIFJF bcDOFU bcGZTO bcHQXC bcGPUB ... bcGFMJ bcCFYO bcGKZY bcIINI bcAPPS bcERNJ bcEJTY
rownames ...
5S_rRNA 0 0 0 0 0 0 0 ... 0 0 0 0 0 0 0
5_8S_rRNA 0 0 0 0 0 0 0 ... 0 0 0 0 0 0 0
7SK 0 0 0 0 0 0 0 ... 0 0 0 0 0 0 0
A1BG 0 0 0 0 0 0 0 ... 0 0 0 0 0 0 0
A1BG-AS1 0 0 0 0 0 0 0 ... 0 0 0 0 0 0 0
... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ...
Do I have to tranform dataframe every time using sc.read_csv ?