cookiecutter-scverse

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TOML formatting

1

This question if there is one still doesn’t seem exhaustively answered: https://github.com/toml-lang/toml/issues/532 prettier-plugin-toml doesn’t seem to be good enough, see #211 The most promising option right now seems to be:...

flying-sheep

Add node_modules to .gitignore

5

Zethson

add taplo formatting

1

Fixes #212, finally! Works, but is still a draft, since the used hook is currently preliminary: https://github.com/ComPWA/mirrors-taplo/issues/13#issuecomment-1930749688

flying-sheep

Come up with a recommended way to render/store tutorials

19

I think that wherever it is computationally feasible, tutorials should be run as a CI check and the tutorial use the version rendered by the CI to avoid failing or...

grst

Create actual merge conflicts on template sync

2

Currently, if there are merge conflicts, `cruft` either creates `.rej` files or some inline merge markers (`>>>>>>>`). Both are hard to overlook, in particular if pre-commit CI is not activated...

grst

Add sphinx.ext.linkcode

1

See this custom extension for how to resolve github urls https://github.com/eventbrite/conformity/blob/master/conformity/sphinx_ext/linkcode.py

adamgayoso

consider adding more checks

3

After switching to Ruff in #147, we basically get a bunch of checks for free (runtime-wise and configuration-wise) We should consider adding more! - [flake8-use-pathlib (`PTH`)](https://beta.ruff.rs/docs/rules/#flake8-use-pathlib-pth) - [pep8-naming (`N`)](https://beta.ruff.rs/docs/rules/#pep8-naming-n) -...

flying-sheep

images in tutorials are rendered too large if not constrained by page width

2


grst

Extract custom sphinx stuff to package

7

#100 did this: > - Remove scanpydoc dependency > - Add typed returns custom extension like in scanpy > - Use same autosummary class template as in scvi-tools (single page...

flying-sheep

Continuation of the discussion in #106. In summary: 1. Using project metadata in locally checked out Python projects always has the issue that a project installed in development mode (`pip...

flying-sheep