EMOGI
EMOGI copied to clipboard
schulter
An explainable multi-omics graph integration method based on graph convolutional networks to predict cancer genes.
Hello, I installed the software and tried to run the toy example, but I get the following error: `No such file or directory: '../data/GCN/training'` There is no "GCN" in the...
Do we need to have the same version of tensorflow? I'm getting this error when installing ERROR: Could not find a version that satisfies the requirement tensorflow==1.15.3 (from versions: 2.5.0,...
Removal of the redundant sigmoid function, as pointed out in the reusability report https://doi.org/10.1038/s42256-022-00454-y
Hello, It is not really an issue, but I wanted to ask advice on how to best create test_mask and train_mask vectors once you have the training and test datasets...
Hiii ：) When I ran this code, this was a problem that held me back. In notebook [preprocess_cnas.ipynb,](https://github.com/schulter/EMOGI/blob/add-license-1/pancancer/mutfreq/preprocess_cnas.ipynb) there is one column says: `cna_blca_matrix = cna_sample_matrix.loc[:, cna_sample_matrix.columns.isin(blca_df_reindexed.columns)]` But it turns...
I run the LPR script for computing the contributions of my interested genes. But the error was prompted " 'KMT2D' not found in gene list. Skipping". my code is: `python...
How to compare methods such as HotNet2 and MutSigCV with those that require label training？How to calculate AUPR on HotNet2?
Hello, Can I get an access to the data used for generating positive and negative labels? The vogelstein labels specifically and other positive and negative genes data. Thanks
Hi, I'm trying to reproduce some of the results, but a file and directory specified in Preprocess_CNAs_Firehose.ipynb ("../../data/pancancer/TCGA/mutation/download_new/cases_all_cancers.2018-11-26.json") is missing. Where can I download or find this file? Thanks
